PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000104G1190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 262aa    MW: 28364.3 Da    PI: 4.3094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000104G1190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1949102356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  PH01000104G1190  49 KKRRLSAEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 102
                      45689************************************************9 PP
2HD-ZIP_I/II134.34.3e-4348140193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls+eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL++++dal +++++L++++++L +e+k+
  PH01000104G1190  48 EKKRRLSAEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYTALRHSFDALCADHDALRRDKDALLAEIKD 140
                      69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2036106IPR009057Homeodomain-like
PROSITE profilePS5007117.49144104IPR001356Homeobox domain
SMARTSM003891.2E-1847108IPR001356Homeobox domain
CDDcd000862.79E-1849105No hitNo description
PfamPF000461.2E-1649102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-2050111IPR009057Homeodomain-like
PRINTSPR000318.7E-67584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000318.7E-684100IPR000047Helix-turn-helix motif
PfamPF021831.8E-16104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKRPSGGGGG HGLLPTVPDD DDGFAGVGME EVDEDMLMCG GGGGGMGEKK RRLSAEQVRA  60
LERSFETENK LEPERKARLA RDLGLQPRQV AVWFQNRRAR WKTKQLERDY TALRHSFDAL  120
CADHDALRRD KDALLAEIKD LKAKLGDEDA AASFSSVKEE PAASDVEPPA AAAQGSSDSD  180
SSAVLNDAEM LPDKDALAAA EAEAEAEVLG AVLHGEVFFH GQQLLKVEDD EAAFLGDEDS  240
ACGGFFADEQ PPSLPWWTEH WT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379ERKARLA
296104RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000104G1190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918720.0FP091872.1 Phyllostachys edulis cDNA clone: bphylf046i13, full insert sequence.
GenBankFP0923980.0FP092398.1 Phyllostachys edulis cDNA clone: bphylf024g13, full insert sequence.
GenBankFP0944210.0FP094421.1 Phyllostachys edulis cDNA clone: bphylf034o12, full insert sequence.
GenBankFP0957960.0FP095796.1 Phyllostachys edulis cDNA clone: bphylf053b02, full insert sequence.
GenBankFP0963140.0FP096314.1 Phyllostachys edulis cDNA clone: bphylf059i02, full insert sequence.
GenBankFP0985540.0FP098554.1 Phyllostachys edulis cDNA clone: bphyst007g13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650851.11e-118homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-119HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-119HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A3S7QI321e-123A0A3S7QI32_FESAR; Class I homeodomain-leucine zipper protein 20
STRINGOPUNC08G16250.11e-119(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.23e-45homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]