PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000103G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 601aa    MW: 64334.3 Da    PI: 6.3618
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000103G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-083523891954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA++ gLt  qV++WF N R +
  PH01000103G0430 352 FEHflHPYPKDSEKLMLARQAGLTRGQVSNWFINARVR 389
                      554459******************************88 PP
2BELL99.91.9e-32211282172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+q+lq+k + Ll +l++Vd+rY++y++q+q+++ss +a+ag  +a+pYt+lAl++iSrhFr+L+dai  q+
  PH01000103G0430 211 EKQDLQNKVTALLAMLDQVDQRYRHYHQQMQALASSLDAAAGRSAARPYTALALQTISRHFRSLRDAIGAQV 282
                      6899****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.7E-42139280IPR006563POX domain
PfamPF075261.3E-43143278IPR006563POX domain
PROSITE profilePS5007111.742330393IPR001356Homeobox domain
SMARTSM003895.9E-8333397IPR001356Homeobox domain
CDDcd000863.69E-11333394No hitNo description
SuperFamilySSF466891.97E-16334400IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-27336399IPR009057Homeodomain-like
PfamPF059205.5E-16350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MATFFSASAN QRDVGGEMSF HHYPPSNLYS ESSTVGLVPL PATTIASENQ TAQGDGRNEL  60
AFMSAAEEPT TNSAAISLQR QLLMLNGQAD ASGMQHHGLL SLSLGTQVPV SLYQYRPGSA  120
DVSLLGPHQP MAATRGAQTG VAVQNSQYLK AARELLDELV NVQDSIVKRK PDKNQRHSSG  180
ECKDADQGED KASDRQESAV DSSPAELSPS EKQDLQNKVT ALLAMLDQVD QRYRHYHQQM  240
QALASSLDAA AGRSAARPYT ALALQTISRH FRSLRDAIGA QVQSTRRSLG EPDAPAHGGG  300
IHRLRYIDQK IRQQRAAQQF GMLPHQLQQQ PTWRPQRGLP ETAVSVLRAW LFEHFLHPYP  360
KDSEKLMLAR QAGLTRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMESN SSSDNGAGKG  420
KDEPARSPED LQSPSSASAM RGVSQLSPFK TEALAGADAA VAGLSGGLDD GAVNNAYSTA  480
DLSLHQRHHG PSASDGVGGI LLQDTLAHHG IVGGGARFLD FGSGLAGLRG YDGGSVSLTL  540
GLHRHDGAGG VTVVTAEQQG LTPAVRGGDG IYAGAFEYVD GPDDQQQFGS SSQMLHDFVT  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17339396158Homeobox protein Meis1
4xrs_B6e-17339396158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000103G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGOB03G14910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-105BEL1-like homeodomain 7