PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000101G1810
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 690aa    MW: 74154.2 Da    PI: 6.1274
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000101G1810genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  PH01000101G1810 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                      79*******************.********************************8 PP
2Response_reg78.32.7e-26181261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l + +y +++++++++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k 
  PH01000101G1810  18 VLVVDDDPTCLAVLKRMLIECRY-DATTCSQATRALTMLRENRggFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKH 109
                      89*********************.****************************************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  PH01000101G1810 110 GACDYLIKPVRMEELKN 126
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-1811672IPR017053Response regulator B-type, plant
SuperFamilySSF521724.55E-3615144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-4215151No hitNo description
SMARTSM004483.7E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.48717132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.74E-2719131No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
SuperFamilySSF466894.57E-20199259IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
TIGRFAMsTIGR015573.1E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAASEEAGVG EFPVGMKVLV VDDDPTCLAV LKRMLIECRY DATTCSQATR ALTMLRENRG  60
GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKWNENK EHEHSGSLDD TDRNRPTNND NEYASSVNDG ADGSWISQKK  180
KRDKEDDDGD LENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIANP FCGPVSSARV ASFGGLDFQA LAASGQIPPQ  300
ALAALQDELL GRPTSSLVLP GRDQPSLRLA TVKGNKPHGE GEIAFGQPIY KCQNNPYGSF  360
PQNSPTVGGM PSFSAWPDNK LGMTDSTSTL GNVNNSQNSN MVLQELQQQP DTMLSGTFHT  420
LDVKPSGIVM PSQSLNTFPA SEGLSPNQNP LIIPAQSSGF LAGIPPSMKH EPVLTTSQKP  480
SSLLGGIDLV NQASTSQPLI STHGGNLPGL MNRNSNVIPS QRISNFQTGN NPYLVNQNSM  540
GLGSKPRGTL KTENTDSLSH SYGYIGGSTP VDSGLLSSQS KNAQFGLLQS PDDVTGSWSP  600
LQNVDTYGNN IGPSNTVSSS SSFQSSNVAL GKLPDQGRGK NLGFVGKGTC IPSRFAVDEI  660
ESPTNNLSQS IGSSGDFVNP DIFGFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000101G1810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1362710.0KU136271.1 Lolium perenne type-B response regulator ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLC5WSM40.0C5WSM4_SORBI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-112response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]