PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000101G1130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 985aa    MW: 109911 Da    PI: 5.4074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000101G1130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.55.4e-191302591128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                      lp+G +F+P+d++l+  +L+++v +        ++++   ++e +++ + +P+d+p  v+++ +  yfF+k+ + y++++   + +    W+++
  PH01000101G1130 130 LPRGAQFNPSDSDLL-WHLAAEVGNGLasrhpfINEFIKsVEEDRVFGCtHPQDIP-GVRQDGRASYFFHKKFRLYNNEND--KYI---SWQKS 216
                      699************.7788888776656655522222225555566555******.677888999**********86443..333...4**** PP

              NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      g+ ++++  +g l g+k+++v+y  k +++++++tdW +h+y++
  PH01000101G1130 217 GTPRSIIL-DGCLRGCKEVFVLYayKTNDSSPQRTDWRLHQYHI 259
                      ********.999**********97777889999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-25123277IPR003441NAC domain
PROSITE profilePS5100523.377130277IPR003441NAC domain
PfamPF023652.5E-7131259IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MAVTHNHGHS VMSIPSIRRG RIGDIIIIRI VVIVLVLFQC LFFDPGPLIF PLQVIHYEFV  60
ILPFVRLSTK INMPVCRYNC IGTTILYPII LNFHLHTCTT LPYFMGTTKC EASAAAEGSG  120
GAAGQSWPGL PRGAQFNPSD SDLLWHLAAE VGNGLASRHP FINEFIKSVE EDRVFGCTHP  180
QDIPGVRQDG RASYFFHKKF RLYNNENDKY ISWQKSGTPR SIILDGCLRG CKEVFVLYAY  240
KTNDSSPQRT DWRLHQYHIK NTMKDEEELV VSKIFYKSQK NQCEWDGKAP AQSAQGASAT  300
DIDFKEDVQL ENHSANIATE SNFAEDCDSE LLSGNGNNQE QVQMETYPDQ DKLSSCKDVL  360
DTTHISHENQ INDHAETELD HISLQERYRI LLAGKHSCSA RVSVEKCVMN ASANSCRQMG  420
AETSESEEIN HEGTAYKEDI CSMWQQISSA QSIIDSAGND NNVMLLGKVP PDTQISPMEC  480
FVDSNDYRAE LLSSPTPTHG NENIQSAARN PETVLVGVKL EPALEGYEIY PSESPRVKSH  540
HSSKNGGLEN TGSVPECSSK DSETDFELLH GTGDLAEKTS AHSACSKQST DPKHVVEGCS  600
LVRSKNSVSS DVCKIISAAA SSQAKITHAE GPLPSLGVKS ELTGSELPGL CENNSINIAE  660
PIVKTTHTRT LNHDGGLAYG SRQRKKRKMA MNSSEKAFEE DAYRNDEGIA YCSRRRRRRK  720
TATDSIEQAL EEDAPGLLQI LLDRGIMVEE IKLYGAEEDN EMLPDCTESD FQDLENVIMK  780
LFPQRASLLK SAARHAKGGK AMYCLACLIS LIEQSRYLQF RDCPVEWGWC RDLQSFVFVF  840
KSHNRIVLER PEYGYATYFF EIVQSLPIEW QILRLVTAMK LSSSGRTALI ENRSLLVGED  900
LTEGEAQVLE EYGWIPNTGL GTMLNYCDRV VHDRWNEKCN TDWRTTIGKL LMAGYSEGQL  960
ITTHIPTKVG TLTEDTEIKL EDPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713718RRRRRR
2713719RRRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000101G1130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558473.10.0uncharacterized protein LOC100826588 isoform X1
TrEMBLA0A0Q3HIZ70.0A0A0Q3HIZ7_BRADI; Uncharacterized protein
STRINGBRADI1G69617.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-38NAC family protein