PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000100G1590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 354aa    MW: 39554.9 Da    PI: 4.7792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000100G1590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.95.3e-16188956128
              NAM  56 kewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + wy  +s  +++y +g+++ r +++gyWk+    + + + ++  vg+k +L fy+g+ap+g++t Wvmhey++
  PH01000100G1590  18 NIWYLnWSDDQQTYDNGENTIRNAENGYWKSVDALR-IPT-STDIVGVKISLQFYEGQAPSGQRTGWVMHEYQV 89 
                      557642677889999***************988755.544.5889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.811110IPR003441NAC domain
SuperFamilySSF1019413.01E-2115110IPR003441NAC domain
PfamPF023651.3E-72789IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAQAYVQPAR QTIHLAGNIW YLNWSDDQQT YDNGENTIRN AENGYWKSVD ALRIPTSTDI  60
VGVKISLQFY EGQAPSGQRT GWVMHEYQVE QNDEANTPQD YKSLCTIFLQ GDKKLNVEDQ  120
RISRNANAPN DRLESYLQYL AEIEEQNAAM NSEIVASNQQ NFSPSKGQDE HKTHNAADAI  180
AFHRTLANEA YIETNDLLSS DPTASTSEYS SRRSMISEEY FDSDAFLREI LNDSNTTDEE  240
HKDCKFSISA PTNSDLVVIS LPEQGLVHNH DNNATVSGTS LEKSVPDGER DQHSNECPQY  300
NPSTSSCFPS SHVKRSRSNN SNSSQGSTKS PQRDRSIGKF GKIGKKYCCF GSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000100G1590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195723.11e-149protein ATAF2-like
TrEMBLA0A3B6BYH01e-152A0A3B6BYH0_WHEAT; Uncharacterized protein
TrEMBLA0A446LTT21e-152A0A446LTT2_TRITD; Uncharacterized protein
STRINGEMT306611e-137(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-16NAC domain containing protein 2