PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000098G0880
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 277aa    MW: 30403.8 Da    PI: 9.1683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000098G0880genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-1070114554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr+++P         ++Ka+ L ++v+ +k+L
  PH01000098G0880  70 HSEAERRRRERINVHLATLRRMIPDT-----NQMDKATLLARVVDQVKDL 114
                      9************************6.....479******9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1356121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.41865114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-870114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1270125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.11E-5158222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAACQHLQEG KKLQELQTYD GCDPSVYRGP ILLPRQASSA PPAVPVGPPE MSSSSGSGRS  60
ATEVRALKIH SEAERRRRER INVHLATLRR MIPDTNQMDK ATLLARVVDQ VKDLKRKASE  120
VTQGMPLPPE TNEVSIECYT GDDGATIGND KNLYIKASIS CDDRPDVFAG IIQAFHGLRL  180
RTIRADMTSL GGRVQHVFIL CKEEGSAGVG LKYLKEAVRQ ALAKVASTEM VYGSSPFQSK  240
RQRILESHYS IMSIQKISFG NFGAEMRENS PSDLKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000098G0880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974411e-161FP097441.1 Phyllostachys edulis cDNA clone: bphyst019c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.11e-135putative transcription factor bHLH107
TrEMBLA0A0D9Y3K31e-137A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.11e-137(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-37bHLH family protein