PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000098G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-X1
Protein Properties Length: 727aa    MW: 79752.1 Da    PI: 8.2865
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000098G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.5e-06149165319
         zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                      +H+C  lCH+GpCppCp
  PH01000098G0690 149 EHTCLLLCHPGPCPPCP 165
                      5***************9 PP
2zf-NF-X116.42e-05201218118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H C   CH GpCppC
  PH01000098G0690 201 CGLHWCPVDCHDGPCPPC 218
                      ****************** PP
3zf-NF-X119.91.6e-06308327119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG+HkC + CH+GpC + C+
  PH01000098G0690 308 CGRHKCPERCHRGPCAEtCR 327
                      *****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.013148166IPR000967Zinc finger, NF-X1-type
PfamPF014220.0034149165IPR000967Zinc finger, NF-X1-type
CDDcd060082.08E-7191239No hitNo description
SMARTSM004380.011201220IPR000967Zinc finger, NF-X1-type
PfamPF014224.3E-4201218IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-7244284No hitNo description
SMARTSM004380.0092254273IPR000967Zinc finger, NF-X1-type
PfamPF014220.15254272IPR000967Zinc finger, NF-X1-type
CDDcd060089.20E-8298343No hitNo description
SMARTSM004380.0059308328IPR000967Zinc finger, NF-X1-type
PfamPF014226.9E-4308327IPR000967Zinc finger, NF-X1-type
PfamPF014226.5350361IPR000967Zinc finger, NF-X1-type
SMARTSM0043855436475IPR000967Zinc finger, NF-X1-type
PfamPF014220.28436446IPR000967Zinc finger, NF-X1-type
SMARTSM004380.098488506IPR000967Zinc finger, NF-X1-type
PfamPF014224.3488505IPR000967Zinc finger, NF-X1-type
SMARTSM004383.3551572IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MPSSSSAAAA AGASSSRKTI PFATATSTST TRPPTPSPSP APAPSQANPS PSSDSDPSSY  60
SSGDETDLTA CDSATASVSW AHQSASAAPS PTWGCPKCRF PYPKSQTPTS YLCFCSKTVD  120
PAADPWILPH TCGDVCGRRL NANPDSGCEH TCLLLCHPGP CPPCPTVVPN ALCFCGAHRE  180
PRRCAHQRYS CPGKCNKRLT CGLHWCPVDC HDGPCPPCAV QGNHNCECGE TTEERLCSER  240
VYQCKRECDG MLECGKHRCE RGCHGGKCGE CPLRGRRTCP CGKRDYPRLE CDAEAATCGS  300
TCEKVLGCGR HKCPERCHRG PCAETCRLVI TKSCRCGGLK KEICDRRLRC GNHKCLSPCH  360
RCHGSVPPPN PEFTLKPMKK KMEKHIECTP GTPCPPCQEV VLVPCFGQHL GQERAMLCSK  420
RRQFPCQHLC GNPLHCGNHY CTKACHVLEI PSNQSEGDTI LSLNRENALA EPCEECDLAC  480
QRVREPPCSH PCPLPCHLND CPPCKVLVKR PCHCGAMVHP FECVYYNNLN AKEQLKVRSC  540
GGPCHRKLPN CPHLCSEICH PGHCPSVDQC MKKVNVRCAC NTLKKEWICQ DVLKEYRRSG  600
RDPKEVPKGQ FGVGLLACGG DCTKKVKVSD SELHLRKNQE IKIPAVEVAN VPKRRKRRDR  660
GQETVQISKF QEMKARVLKC LLVILLSMIV AAGLYLLGKG VCRLSDWMNE MEEQRARQRH  720
PRATRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1651657PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000098G0690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-175NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0E0BXF70.0A0A0E0BXF7_9ORYZ; Uncharacterized protein
STRINGEMT048290.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-155sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors