PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000095G1450

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 331aa MW: 36463.7 Da PI: 9.0788

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000095G1450	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.9e-34	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl PH01000095G1450 16 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 70 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	13	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-32	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	15	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-24	16	71	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-8	18	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-24	111	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV MGVKGLTLYH 60 LKSHLQKFRL GKQPHKEFND HSIKDAAAME MQRNAASSSS MMGRSMNDRN VHMNESIRMQ 120 MEVQRRLHEQ LEVQKHLQMR IEAQGKYMQS ILEKAYQAAC PAGYKSVGNQ AILDVCSIKD 180 IGPSMGFHSL QDLHMYGGGH LDLQQQMERP MESFFACNES SIGSMGKKRP SPYAAAGKSP 240 MMWGDDGDQD KSDQLQMAPP MMDGSIDVMG SIADVYEAKP IMSGDSTGSK GFKGPGSKLE 300 RPSPRRPQIG GERMGSPSVI GAQTRNLSYG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-19	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-19	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-19	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-19	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000095G1450

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728052	1e-170	KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799290.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	2e-98	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2S3GLK6	0.0	A0A2S3GLK6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F2K4	0.0	A0A2T7F2K4_9POAL; Uncharacterized protein
STRING	Pavir.Aa03369.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-91	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]