PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000087G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 30896.3 Da PI: 5.8773 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.8 | 1e-12 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky PH01000087G0530 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 166 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.875 | 13 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 0.018 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.37E-9 | 17 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.92E-6 | 18 | 65 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-16 | 117 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-17 | 119 | 169 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-11 | 119 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-11 | 122 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.04E-10 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAVEEASSSS GEEGSGGWTR EQEKAFENAL ATTEEEEGKA MWEKIAEAVE GKTADEVRRH 60 YELLVEDVDG IESGRVPLPV YAGDGGAEEG SGGGGKKGGG GGGHGEKGSA KSAEQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VISRTPTQVA SHAQKYFIRL NSMNRERRRS 180 SIHDITNVNN GDASAAQRPI TGQTNGQAAN AGKSPMQSPQ PANTPPGVDA YGTTIGQPVG 240 GPLVSAVGTP VTLPVPAAPH MAYGMHAPVP GAVVPGAPIS MPPIPYPMLP PSSHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-15 | 14 | 86 | 6 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 101 | GGKKGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000087G0530 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093944 | 0.0 | FP093944.1 Phyllostachys edulis cDNA clone: bphylf060p06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448771.1 | 1e-154 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-97 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | C5YAI2 | 1e-153 | C5YAI2_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032880.1 | 1e-154 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-84 | MYB family protein |
Publications ? help Back to Top | |||
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