PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000087G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 197aa    MW: 20928.2 Da    PI: 7.0461
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000087G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.15e-354197258
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58
                     +++ l+cprC stntkfCyynnys++qPr+fC+aCrryWtkGG+lr+vPvGg++r+ 
  PH01000087G0200 41 QQQLLECPRCGSTNTKFCYYNNYSTAQPRHFCRACRRYWTKGGTLRDVPVGGACRRG 97
                     67899**************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.5E-324397IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7084599IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-224596IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104783IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAPAASLLSA TSVAAASDAE PLDSSGSLPQ GGDQEAARKN QQQLLECPRC GSTNTKFCYY  60
NNYSTAQPRH FCRACRRYWT KGGTLRDVPV GGACRRGGNK RRRVSAEPSS ASPPATLARA  120
EDAYPNLPTF PFLSDGIFLP QFDLGVAPAA FSWPSAVPDL YGGLAPWDDG TRGVGETGAW  180
DNFTDIVGLS WPPPTGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000087G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942330.0FP094233.1 Phyllostachys edulis cDNA clone: bphyst016j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824347.13e-66dof zinc finger protein DOF1.6-like
TrEMBLA0A0A9K5581e-81A0A0A9K558_ARUDO; Uncharacterized protein
STRINGOPUNC04G27290.16e-69(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140472427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.15e-30Dof family protein