PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000084G1170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 274aa    MW: 28821.1 Da    PI: 11.2968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000084G1170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-1986136155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  PH01000084G1170  86 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 136
                      689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.36E-1886146No hitNo description
PfamPF008472.9E-1386136IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2287145IPR016177DNA-binding domain
PROSITE profilePS5103224.5487144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3187145IPR001471AP2/ERF domain
SMARTSM003801.7E-3687150IPR001471AP2/ERF domain
PRINTSPR003672.1E-108899IPR001471AP2/ERF domain
PRINTSPR003672.1E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAQMRGRRAQ LLRLWVKPPL PLGPPHLPPP LLIPPRLPFP LPTPQPNQTH DSTTPNNNNR  60
ARSNTWRSMA PKNAPPAAAV ADGMEPRFRG VRKRPWGRYA AEIRDPARKA RVWLGTFDTA  120
EAAARAYDAA ALHFRGPKAK TNFPVTYAHV PPPKALAVGA VSPSSSTVES SSRDSPAAAP  180
PTTAPVAPPS LDLSLGVPAM VAAQPFLFLD PRVAVTVAVA APVPRRPAVV GVKKAVAREE  240
EQSDTGSSSS VVDASPAVGV GIDLNLPPPA EEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20871471475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000084G1170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933870.0FP093387.1 Phyllostachys edulis cDNA clone: bphylf043h08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976762.11e-76ethylene-responsive transcription factor 4
TrEMBLA0A0E0KV085e-84A0A0E0KV08_ORYPU; Uncharacterized protein
STRINGOPUNC04G22340.19e-85(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-21ethylene response factor 7