PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000083G1220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 317aa    MW: 34690 Da    PI: 10.2183
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000083G1220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32148201255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PH01000083G1220 148 PRMRWTTTLHTRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 201
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.5E-16145202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28146201IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23148202IPR006447Myb domain, plants
PfamPF002491.6E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MELFPRQPDL SLNISTPSSS SPSPAPAPAP ATASWTWRML PDATATTSAR APPGLPANSD  60
VVNLRHHRRH NQEQLKAAMQ LQPIHGVPVY QQQQLHRQMQ PYTVMAPRSN GGSSRLFSHA  120
GDGFAPRTSS SSRFLARLPP GRRAVRAPRM RWTTTLHTRF VHAVELLGGH ERATPKSVLE  180
LMDVKDLTLA HVKSHLQMYR TIKNTDKPVS SGQNDGFDNA SAGDISNDSL PDGSVGVQNK  240
RIASDQNDAN YSGLWSNNSS SKVDWLDPGL PGEQANETCR EYLKDVEPKM GLETSMLRLP  300
GRLNLEFTLG IGRAPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16149203357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000083G1220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016680.0FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656560.19e-94PREDICTED: probable transcription factor KAN2
SwissprotQ9C6165e-45KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA2Y8H11e-112A2Y8H1_ORYSI; Uncharacterized protein
STRINGOMERI06G00740.14e-98(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-47G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]