PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000083G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 343aa    MW: 36656.5 Da    PI: 4.8427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000083G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.42.8e-45139341154374
             GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                      +  el+ t+e L++fA+elg+pfefn++v + ++  ++  L+  p+Ea+aV+l +   ++         + ++ L++vk+l+P +vv+v++ +d
  PH01000083G0250 139 HPLELHLTHESLTRFAAELGIPFEFNAIVLDPFDPSSPMGLSAAPDEAVAVHLPIGSGTFS--------QAPAALRVVKQLRPAIVVCVDHGCD 224
                      678999*************************************************999997........56789******************** PP

             GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                      +++ ++ ++ l+ l+ ++al++sl+a  ++  +  +kvE+++l+++++ +v   +         l  W++++ +aGF p++ls+ a++qa++ll
  PH01000083G0250 225 RGDLPLPRHALNLLRSCAALLESLDAA-GSSPDVVTKVEQFILRPRVERLVLGDK---------LPPWQSMFASAGFAPLQLSNAAEAQAECLL 308
                      ************************998.6667999****************8654.........67**************************** PP

             GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+++++g++ve+++++lvl W++  LvsvS+Wr
  PH01000083G0250 309 RRTANHGFHVEKRQAALVLWWQRSVLVSVSSWR 341
                      ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.3421321IPR005202Transcription factor GRAS
PfamPF035149.7E-43139341IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSCDLHPKLE LELDLDNDAP AQGSVFAAAK RLNKSREPTS VLYNRSPSPP TSSSLGGAAS  60
SYSSAAPEPP PISAEDWEVV LSGDMAAPAA QPQDSSFLRW IMDAGYDDGD GDAFGFKGPA  120
FDPFLPPPPH QEPAAVEAHP LELHLTHESL TRFAAELGIP FEFNAIVLDP FDPSSPMGLS  180
AAPDEAVAVH LPIGSGTFSQ APAALRVVKQ LRPAIVVCVD HGCDRGDLPL PRHALNLLRS  240
CAALLESLDA AGSSPDVVTK VEQFILRPRV ERLVLGDKLP PWQSMFASAG FAPLQLSNAA  300
EAQAECLLRR TANHGFHVEK RQAALVLWWQ RSVLVSVSSW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-12143341160375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000083G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1825620.0KC182562.1 Dendrocalamus latiflorus scarecrow-like 6 protein (SCL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693433.11e-115PREDICTED: scarecrow-like protein 6
TrEMBLA0A088B1981e-129A0A088B198_DENLA; Scarecrow-like 6 protein
STRINGOPUNC06G00270.11e-116(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.16e-52GRAS family protein