PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000083G0130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 154aa    MW: 17682.9 Da    PI: 9.454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000083G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.6e-56101391129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeelv++yL++kv+++++ l +vik+vd+yk+ePwdL++  ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  PH01000083G0130  10 VPPGFRFHPTDEELVDYYLREKVASTRIGL-NVIKDVDLYKIEPWDLQEkcRIGAeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKP 102
                      69**************************99.99**************953444442556*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++ k++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  PH01000083G0130 103 IYA-KHSLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 139
                      ***.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-585144IPR003441NAC domain
PROSITE profilePS5100554.30910153IPR003441NAC domain
PfamPF023653.6E-2911138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSSTQAQAQV PPGFRFHPTD EELVDYYLRE KVASTRIGLN VIKDVDLYKI EPWDLQEKCR  60
IGAEEQNEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KPIYAKHSLV GMRKTLVYYK  120
GRAPNGHKSD WIMHEYRLET NENGPPQAST AVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5231388140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000083G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304791.15e-97NAC domain-containing protein 7-like
RefseqXP_014754958.15e-97NAC domain-containing protein 7-like isoform X1
SwissprotF4HYV51e-88NAC26_ARATH; NAC domain-containing protein 26
TrEMBLM8BQ352e-96M8BQ35_AEGTA; NAC domain-containing protein 7
STRINGBRADI1G52187.22e-96(Brachypodium distachyon)
STRINGEMT240794e-97(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.13e-80Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]