PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000081G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 363aa    MW: 41444.7 Da    PI: 4.7758
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000081G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32.2e-32451352101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++ d++++ ++sw ++gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+
  PH01000081G0140  45 FLTKTFDLVADPATDGVVSWGRSGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQRQLLK 129
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                       ikr++
  PH01000081G0140 130 MIKRRR 135
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.53E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5941134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-3741134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDPLLPGIVK EEWPPSSPPD EEGEGDAAGA PQPMEGLHEV GPPPFLTKTF DLVADPATDG  60
VVSWGRSGNS FVVWDPHVFA AVLLPRFFKH NNFSSFVRQL NTYGFRKIDP DRWEFANEGF  120
LRGQRQLLKM IKRRRPLSYL PASQQQTLGS CLEVNQFGLD EEIDRLKCDK NILLTEVVKL  180
RQEQQSTRAD MRAMEERLQH AEQKQLQMMG FLARAMQNPD FFHQLIQQQD KRKELEDAFS  240
MKRRRSIDVV PFLSPGETSQ SEELESTFLF EPRAFTELNE PGNSELENLA LNIQGLGKAK  300
QDDKASRNQV SSEIELTEDF WEELLNEGMR DEAGMSELER RRPRYVDALA QKLGYLSNSS  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-264313418120Heat shock factor protein 1
5hdg_A2e-26431348110Heat shock factor protein 1
5hdn_A2e-26431348110Heat shock factor protein 1
5hdn_B2e-26431348110Heat shock factor protein 1
5hdn_C2e-26431348110Heat shock factor protein 1
5hdn_D2e-26431348110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKMIKRR
2230244KRKELEDAFSMKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000081G0140
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA2XCT90.0A2XCT9_ORYSI; Uncharacterized protein
STRINGONIVA03G04400.10.0(Oryza nivara)
STRINGOBART03G04630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B