PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000080G1510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 337aa    MW: 36343.5 Da    PI: 6.6351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000080G1510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18159208255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa  +++a+ +l+g
  PH01000080G1510 159 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDNAEDAALTYDKAAFRLRG 208
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-30158218No hitNo description
SMARTSM003805.7E-35159222IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21159217IPR016177DNA-binding domain
PROSITE profilePS5103222.484159216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-31159217IPR001471AP2/ERF domain
PRINTSPR003671.6E-9160171IPR001471AP2/ERF domain
PfamPF008471.9E-11160208IPR001471AP2/ERF domain
PRINTSPR003671.6E-9182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MADRDLYNTT NQLSSSSSSS SDQELMKALE PFIRSASPTS STSTSSPFHS YSSPLPQESY  60
YYPVSSYTTV PAPTAPTATS FSKLPPLPPS SQYTSEVAAY PPVNGAVGLT HLGPEQIQQI  120
QAQFLFQQQQ RGLAASLLGP RAQPMKQAGE APSFSAAKLY RGVRQRHWGK WVAEIRLPKN  180
RTRLWLGTFD NAEDAALTYD KAAFRLRGDA ARLNFPNLRR GGAHIAGPLH ASVDAKLTAI  240
CQNIAATPTA SKSNTATATA PPDSPKASAS TTTTEGDESV LSAGSPPLPL LPPSQQLAQP  300
LPEMANLDFT EAPWDESDAF HLHKYPSWEI DWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20155216163ATERF1
3gcc_A2e-20155216163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000080G1510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015560.0FP101556.1 Phyllostachys edulis cDNA clone: bphylf026l06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148534.11e-123ethylene-responsive transcription factor RAP2-13-like
TrEMBLF2DMC21e-128F2DMC2_HORVV; Predicted protein
STRINGPavir.Da01302.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-54related to AP2 4