PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000077G1110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 389aa    MW: 41669.5 Da    PI: 8.2926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000077G1110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.4e-52171501129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee+++ yL +k  + +++  +++ evd++k+ePwdLp+k++ +e+ewyfF+++d ky+tg r+nratk+gyWkatgkd+e++s
  PH01000077G1110  17 LPPGFRFHPTDEEVITSYLLQKFFNPSFTS-RAVGEVDLNKCEPWDLPSKATMGEEEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREIFS 109
                      79*************************999.88***************9888999*************************************** PP

              NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +      ++ lvg+kktLvfy grap+g+kt+Wv+he+rle
  PH01000077G1110 110 NkkpatgGNLLVGMKKTLVFYMGRAPRGTKTNWVIHEFRLE 150
                      75555544444***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-6111176IPR003441NAC domain
PROSITE profilePS5100556.6517175IPR003441NAC domain
PfamPF023655.0E-2618149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVESVTTARS AQGALFLPPG FRFHPTDEEV ITSYLLQKFF NPSFTSRAVG EVDLNKCEPW  60
DLPSKATMGE EEWYFFCHKD MKYPTGMRTN RATKEGYWKA TGKDREIFSN KKPATGGNLL  120
VGMKKTLVFY MGRAPRGTKT NWVIHEFRLE GNSRDNAGLR VNPKDEWVVC KVFHKNGEAK  180
TKGGAVEYSA GTTANVSSVD AGEGDDDLLD SMIDPIYFNN SASSLPAINA AAPYNADYSI  240
SAAAGSTSSG STGSFVLPNY SLVNTSNQQF ALANSVPTSS SGKSSPWNML PAAGPAAHCM  300
GSYNNSVSLH QDDHQAVMVK ALGGVIGPNS GVSNGLPSSA MAGVSKQNYL GAPQNKLWSY  360
GHPYRSHLTT SAATTGSAEN LGARLVHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-521518015170NO APICAL MERISTEM PROTEIN
1ut4_B2e-521518015170NO APICAL MERISTEM PROTEIN
1ut7_A2e-521518015170NO APICAL MERISTEM PROTEIN
1ut7_B2e-521518015170NO APICAL MERISTEM PROTEIN
3swm_A2e-521518018173NAC domain-containing protein 19
3swm_B2e-521518018173NAC domain-containing protein 19
3swm_C2e-521518018173NAC domain-containing protein 19
3swm_D2e-521518018173NAC domain-containing protein 19
3swp_A2e-521518018173NAC domain-containing protein 19
3swp_B2e-521518018173NAC domain-containing protein 19
3swp_C2e-521518018173NAC domain-containing protein 19
3swp_D2e-521518018173NAC domain-containing protein 19
4dul_A2e-521518015170NAC domain-containing protein 19
4dul_B2e-521518015170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000077G1110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985050.0FP098505.1 Phyllostachys edulis cDNA clone: bphyem203e08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-150NAC domain-containing protein 77
SwissprotQ5CD171e-116NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-148K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-80Arabidopsis NAC domain containing protein 87