PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000077G1100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 366aa    MW: 40879.9 Da    PI: 6.0586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000077G1100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.5e-51111381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+GfrFhPtdeel+v+yL +++++  +++  +++ev+iy+++PwdLp+k+  +e+ewyfFs+r++ky++g r+nra+ sgyWkatg dk+++s
  PH01000077G1100  11 LPAGFRFHPTDEELIVHYLMNQAASMACPV-PIVAEVNIYRCNPWDLPAKALFGENEWYFFSPRERKYPNGARPNRAAGSGYWKATGADKAIVS 103
                      799***************************.88***************8877899**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +e++g+kk Lvfy+g+ pkg+ktdW+mheyrl
  PH01000077G1100 104 TpASENIGVKKALVFYRGKPPKGVKTDWMMHEYRL 138
                      988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-637164IPR003441NAC domain
PROSITE profilePS5100559.02711164IPR003441NAC domain
PfamPF023651.3E-2512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPLPSPSMPA LPAGFRFHPT DEELIVHYLM NQAASMACPV PIVAEVNIYR CNPWDLPAKA  60
LFGENEWYFF SPRERKYPNG ARPNRAAGSG YWKATGADKA IVSTPASENI GVKKALVFYR  120
GKPPKGVKTD WMMHEYRLTA TEIKQRRGSS MRLDDWVLCR IYKKSNNFLF SADGQEQEEG  180
STVEEDSLNI NENSPKPEAP ADDDQFRPMT IAKSCSLTDL LNSIDYSALS QLLLDGSSDA  240
PEPMPSPLIY ATPPCQTLNY INNNVNNHVS MPQVDAPSDY SANYNSLKRK RLVTESAARS  300
LEDGSDFTKK SILPSDSRIS NFGSTSSYCN QKLADQTQSS SFQYSNLMSH SFLNQQLLLN  360
NNLLMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-721116815172Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000077G1100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1009640.0FP100964.1 Phyllostachys edulis cDNA clone: bphyst027f19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809798.11e-157NAC domain-containing protein 67-like
TrEMBLA0A0E0MBX41e-161A0A0E0MBX4_ORYPU; Uncharacterized protein
STRINGOPUNC11G01330.11e-162(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-82NAC-like, activated by AP3/PI