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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01000073G1000 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
GRAS |
| Protein Properties |
Length: 454aa MW: 49040 Da PI: 5.1302 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000073G1000 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 300.6 | 3.9e-92 | 60 | 450 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsPil 91
++lL++cA+a++++d++l+q++L+ l+++a dgd++qRl+a f+ AL ar +r ++ + +a+++ +s ++++++a++l f++++P++
PH01000073G1000 60 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTPLH 153
79***************************************************943444555555444444444777777777789******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
+f++ +aN aIl+aveg vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ + + ++ee+g +L +fA++ +++++f+v+
PH01000073G1000 154 RFGYTAANAAILDAVEGFPVVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGLNApppaLDMSYEELGAKLVNFARSRNMSMDFRVV 247
******************************************************87664444556588899*********************** PP
GRAS 182 .......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
+++ +++l++++L + Eal+Vn+++ lh+++de++ + s r+ +Lk +++l P +vvvve++ad ++ + + r+ a++
PH01000073G1000 248 ptspadaLMSLVDQLHMQQLVSDGSEALVVNCHMLLHTVPDETAGSVSlaqpvsLRTMLLKSLRTLDPSLVVVVEEDADFTADDVVGRLRAAFN 341
988877777778888888888888****************998777666657767999************************************ PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
+ + +d++++ lp+ se+r+++E+e +g++++nv+a+eg +r+er+e + W +r+++aGF++v+++e+aa ++k++l++++ g+ ++ e++
PH01000073G1000 342 FLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVDRVERQEDRAMWGQRMRSAGFRAVAFGEEAAGEVKAMLNEHA-AGWGMKREDD 433
**************************.********************************************************.889999**** PP
GRAS 357 slvlgWkdrpLvsvSaW 373
l+l+Wk++++v++SaW
PH01000073G1000 434 DLTLTWKGHNVVFASAW 450
***************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MMQFTHNAPP PPPLHPNGHG LGLGLFLDVG APRARPWPGS FPTPSSKISL GNLNSTSCME 60
QLLVHCANAI EANDATLTQQ ILWVLNNIAP ADGDSNQRLT AAFLCALVAR ASRTGACKAV 120
TAAVAAAVES AALHVHRFTA VELASFVDLT PLHRFGYTAA NAAILDAVEG FPVVHIVDLS 180
TTHCMQIPTL IDMLASRAEG PPILRLTVAD VGLNAPPPAL DMSYEELGAK LVNFARSRNM 240
SMDFRVVPTS PADALMSLVD QLHMQQLVSD GSEALVVNCH MLLHTVPDET AGSVSLAQPV 300
SLRTMLLKSL RTLDPSLVVV VEEDADFTAD DVVGRLRAAF NFLWIPYDAV DTFLPKGSEQ 360
RRWYEAEVGW KVENVLAQEG VDRVERQEDR AMWGQRMRSA GFRAVAFGEE AAGEVKAMLN 420
EHAAGWGMKR EDDDLTLTWK GHNVVFASAW VPS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
