PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000070G1490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 349aa    MW: 38650 Da    PI: 9.6775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000070G1490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.6e-56161461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd+e+++
  PH01000070G1490  16 LPPGFRFHPTDEELITYYLRQKLADGSFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSVRDRKYPTGVRTNRATNAGYWKTTGKDREIFT 108
                      79*************************999.89***************99999****************************************9 PP

              NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             elvg+kktLvfykgrap+gekt+Wvmheyrl
  PH01000070G1490 109 GqlptAPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 146
                      766655666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6413167IPR003441NAC domain
PROSITE profilePS5100561.27716167IPR003441NAC domain
PfamPF023654.6E-2917146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEGSGGGRGS KKEESLPPGF RFHPTDEELI TYYLRQKLAD GSFTARAIAE VDLNKCEPWD  60
LPEKAKMGEK EWYFFSVRDR KYPTGVRTNR ATNAGYWKTT GKDREIFTGQ LPTAPELVGM  120
KKTLVFYKGR APRGEKTNWV MHEYRLHSKS TSKSNKDEWV ICRVFAKSAG VKKYPSNNVH  180
SRSHNPYTLD VVPPLLPTLL QHNPFARGHH PYMTPADLAE LSRFARGTPG LHPHIQPHLG  240
YINPAAPFTL SGLNLNLGAP SPTMPSPPQP ALHAMPMPMP MPMPMDQTGS TNQVMTTQQM  300
APGLSNCVIP PGGGGGFSTD STGGAGIRYQ NLDVDQLVER YWHGSYQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-561517316171NO APICAL MERISTEM PROTEIN
1ut4_B1e-561517316171NO APICAL MERISTEM PROTEIN
1ut7_A1e-561517316171NO APICAL MERISTEM PROTEIN
1ut7_B1e-561517316171NO APICAL MERISTEM PROTEIN
4dul_A1e-561517316171NAC domain-containing protein 19
4dul_B1e-561517316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000070G1490
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660793.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ22e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0E8I20.0A0A0E0E8I2_9ORYZ; Uncharacterized protein
STRINGOMERI07G04420.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.27e-90NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]