PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000070G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 624aa    MW: 67787.8 Da    PI: 4.3338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000070G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-32101292128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp ++v a +  +     + +      + ++r    gyWk+tgkd+ ++
  PH01000070G0710  10 PPGFRFSPTDEELVLFFLKRRIASGRPTP--YIADVDVYKSHPSHLPgTEVGAADGgQAVVLLQPAG----PQVPQRL--PGYWKTTGKDRCIC 95 
                      8*********************9999555..6***************65665544423333333222....2356785..69************ PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +g++vg kktLv+y+grap+ge+tdWvmhey++
  PH01000070G0710  96 N-GGRTVGSKKTLVYYHGRAPRGERTDWVMHEYTI 129
                      9.9******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-387152IPR003441NAC domain
PROSITE profilePS5100537.2599152IPR003441NAC domain
PfamPF023655.0E-1810129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MENPPPRRWP PGFRFSPTDE ELVLFFLKRR IASGRPTPYI ADVDVYKSHP SHLPGTEVGA  60
ADGGQAVVLL QPAGPQVPQR LPGYWKTTGK DRCICNGGRT VGSKKTLVYY HGRAPRGERT  120
DWVMHEYTIF GDALPPAARG REAYALYKLF QKSGSGPKNG EQYGAPFREE DWLDDDDDEG  180
VAGAADPIPT TTSDRAAIAE VQIGDLEVIL LQIGNDQENI EPQSDFSTPV SSQFQLQQGH  240
RQGWLSDDGD KAEVADATTS SSAVLVAENT CTELPLGNLE GLLMQISDDQ QTAELFSDFS  300
TSVPQLQIQH DGHQAWLNAN MEEVGIGDFH GSHGATFSSV DLSSIVQEST DVDPRTERSN  360
QIAQSVLTNV PLSGETNCAE EASVLRSVSG LVSFDSQDAD EEFLEINDFF DPEDVGQSMG  420
CTAIEHLISA SNGMFDSLEY SDAPMFLPGS VDKAGVVAEN QYVDFGDSGI QNQGFQYTDE  480
LWTHNQVALN VRSHMNHNHV VLSSHASGTA KIHRVNEEPP NWSSSASQSW FNAALSALLD  540
SVPSSPAMAA ENTVLNRTLQ RISSFRSQQA ANEESSTPVI QDRRRGGGLI FVSLLILLAA  600
IMWTFATGSA VEFCKGLWKS SSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-271012916140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000070G0710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555527e-98AK355552.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022I04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578349.10.0NAC domain-containing protein 17
TrEMBLI1IRD40.0I1IRD4_BRADI; Uncharacterized protein
STRINGBRADI4G34022.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-43NAC domain containing protein 17