PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000068G1510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 267aa    MW: 29929.8 Da    PI: 5.9873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000068G1510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00013872237
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK 37
                     +  ++erE+  Rd+ N+ f eL ++l ++ +++++K
  PH01000068G1510 38 KIHKSEREKLNRDKQNDLFTELGTMLEPD-RQNNGK 72
                     66789*********************996.244443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-1034105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-734105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3853686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVPRDRVNVA GAASFGTAER LVQGPILNKK CEKKVPKKIH KSEREKLNRD KQNDLFTELG  60
TMLEPDRQNN GKACVLGDTT RILKDLLSQV ESLRKENSAL KNESHYVALE RNELRDDNSM  120
LRDEILELQN ELRMRLEGNP IWSQGTTRSA LTVHHSTSIV FPVQHSAHLP VITATVLPPQ  180
QPVVIEQCYA ATPRELQLFP EVASTEDSEL SQDQEISNNV TRPQARYPTP MGTLPVNRFP  240
ILPRMGDEQQ CSSGTTGTSE EDGLDRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000068G1510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943470.0FP094347.1 Phyllostachys edulis cDNA clone: bphyem125f03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168705.11e-138transcription factor bHLH47-like
SwissprotQ69V101e-134BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A1D5UZ021e-137A0A1D5UZ02_WHEAT; Uncharacterized protein
TrEMBLM8BWM91e-137M8BWM9_AEGTA; Transcription factor bHLH47
STRINGEMT262231e-137(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.35e-31bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]