PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000065G1920
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 338aa    MW: 34680.4 Da    PI: 9.1483
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000065G1920genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1311.1e-40571682112
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++++ ++a
  PH01000065G1920  57 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPAHLRAA 150
                      789******************************************************************9999999999999999999666666 PP

              TCP  95 akskksqksaasalnlak 112
                        +++ +++a +   +  
  PH01000065G1920 151 GGPRFGDARADAWDRVVG 168
                      644444444443333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3961191IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67563117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDVAGDAGGG RHPNFPLQLL EKKEDQPCST SPAAGVGVGA GKNGSAPGEL QARKVAPPKR  60
TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA EPAVIAATGT  120
GTIPANFTSL NISLRSSGSS LSIPAHLRAA GGPRFGDARA DAWDRVVGLG VDTDLSRKRR  180
WEQEMQQQQY QQQMAGYTQS QIPGTVWMVP SSNTQAGGGA PVGGGGGSES IWTFPQSGSG  240
SAATVYRGAP SGLHFMNFPA PMALLPAGGQ QMGLGQVGGN GSGGGEGHMG ILAALNAYRA  300
QAAASDAGAG QNGAEGSSQH QQHGGGERHE SINASDS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000065G1920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642401e-125AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035131e-125AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035691e-125AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149621e-125AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-125CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655935.11e-136PREDICTED: transcription factor TCP14-like
TrEMBLA0A0A8Y7R21e-145A0A0A8Y7R2_ARUDO; Uncharacterized protein
STRINGOB06G17670.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-45TCP family protein