PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000064G1730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 32262.8 Da PI: 7.5005 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv ++++ G+g+W++++ + g+ R+ k+c++rw +yl PH01000064G1730 14 KGPWTPEEDLVLVSYIQEQGPGNWRAVPTRTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++ a++++ Rt++++k++w+++l PH01000064G1730 67 RGNFTDQEEKLIVHLQALLGNR-WAAMASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.064 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.47E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.72E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.635 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.00E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MVRPPCCDKE GVKKGPWTPE EDLVLVSYIQ EQGPGNWRAV PTRTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIVH LQALLGNRWA AMASYLPERT DNDIKNYWNT HLKRKLQSGS 120 AAASVPAAQR PASSSKGRWE RRLQTDINMA RHALREALTS LEDVKPKPDA GGAGAADTDS 180 PASSSSGASQ SSPSSAGYVL TTENISRMLD GWARKGCTGS GPTTPGATES ASGSSEASDV 240 SYGAAARALG SVFEYETKPA VGAPELTHLS AIESWLFADD SNDHHSQGGS LLDAAMDYSF 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000064G1730 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042611 | 0.0 | BT042611.1 Zea mays full-length cDNA clone ZM_BFb0368F24 mRNA, complete cds. | |||
GenBank | KJ727533 | 0.0 | KJ727533.1 Zea mays clone pUT5393 MYB transcription factor (MYB94) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168716.1 | 1e-147 | transcription factor MYB30-like | ||||
Swissprot | Q9SN78 | 9e-96 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | A0A1D6RPP6 | 1e-146 | A0A1D6RPP6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453B0T7 | 1e-146 | A0A453B0T7_AEGTS; Uncharacterized protein | ||||
STRING | Si030560m | 1e-146 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 6e-89 | myb domain protein 30 |
Publications ? help Back to Top | |||
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