PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000061G1490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 663aa    MW: 71968.5 Da    PI: 5.0034
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000061G1490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.8e-27210263155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+ Wt++LH++Fve+v+q+ G+e+A+Pk+il++m+v+ +t+e+v+SHLQkYRl
  PH01000061G1490 210 KPRVTWTSQLHRKFVEVVNQI-GIERAVPKKILDMMDVDYITRENVASHLQKYRL 263
                      79*******************.********************************8 PP
2Response_reg79.51.1e-26281361109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+ +l++ +y ++++a+++e al++l+e +  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i+++a+ge e++ + +  
  PH01000061G1490  28 VLAVDDDPVCLKLLEYLLRHCKY-HATTAAHAETALKILREGTdqFDLVISDVHMPDMDGFKLLELIGLEM-DLPVIMLSANGETETVMKGIAH 119
                      799********************.***************999889**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp+  +el +
  PH01000061G1490 120 GACDYLVKPVRVKELKN 136
                      ***********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.0E-1475661IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.1E-4225164No hitNo description
SuperFamilySSF521722.56E-3625149IPR011006CheY-like superfamily
SMARTSM004482.9E-3326138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.38327142IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-2428136IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.52E-2329141No hitNo description
SuperFamilySSF466898.42E-19208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-28208268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24210263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAEEEMTVGE ENQGKEAVVD KFPVGMRVLA VDDDPVCLKL LEYLLRHCKY HATTAAHAET  60
ALKILREGTD QFDLVISDVH MPDMDGFKLL ELIGLEMDLP VIMLSANGET ETVMKGIAHG  120
ACDYLVKPVR VKELKNIWQH VVRRKPDLRN CRSGGNDDAD QKVQSGNAEP EGEQGGAKLT  180
MKYSRKKKND VDDSDDHANK ENTDLSTEKK PRVTWTSQLH RKFVEVVNQI GIERAVPKKI  240
LDMMDVDYIT RENVASHLQK YRLYLKRVSK YTSRKSNLFV DPSERWNSVY NKKNEPDSIK  300
DYHEHERRQP SPADVSSNSS NLFGRMNSPS ALGAHGLLTT QSIQLSNAHS NLGMGTVGHG  360
GSLLKDAVPK SLQDLLNGEP SNARNSSSSG NSYVSILRGK LLEASKGIPS CLSGDSFADI  420
SNGGILGPAN QFPVQSPEFG NHPSVQMNSS STDLFGTLVG DASQFPDPGN CSNSWQTAVP  480
SKFSDLRKDG TSLGPSQANT PKINQLAGFA ASSDQIPMFG NEPQNQMAAI VNTTASMAGL  540
NEQMVPFNIG SNTSSKEMLN DNFAFGSASS ISYALPNLQM GSFVMPAQML NGGGAGGILP  600
VQDGTANQQA VDDQLNYSND FLMGTNGPNG SGDLDYIIAG LLNQDFIEKD DAFVDGDWEL  660
VP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-24206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000061G1490
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693656.10.0PREDICTED: two-component response regulator ORR25-like
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLJ3MGA00.0J3MGA0_ORYBR; Uncharacterized protein
STRINGOB06G30440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-94response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]