PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000061G1340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 247aa MW: 26008.2 Da PI: 10.3316 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25 | 4.1e-08 | 146 | 188 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L+ke++ l+ + +l +e+ PH01000061G1340 146 RPRKKMRLPEIQQLVRSLTVENDGLRKEMKALQRACTALSKEN 188 89*************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-5 | 146 | 185 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTAADAEAAA DIICSLRAAD LAGWTPPWCR PPPACDGVKE EELAWPAVAR GKRSRSRRRS 60 PSGSGSSATK GRLARGSPAS PLDYSGGSGS GASTSGGEDG AFCSPPAAVH RHAEPTPTPA 120 AATKVGSAGR RPSILPVPPP RPAGQRPRKK MRLPEIQQLV RSLTVENDGL RKEMKALQRA 180 CTALSKENGK LETRLEQSSK RSGIKSEEQQ RKPQLDQRAA EQDAQNGFVL PDLNLPVQDI 240 ADGSAAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | KRSRSR |
2 | 145 | 151 | RPRKKMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000061G1340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098002 | 0.0 | FP098002.1 Phyllostachys edulis cDNA clone: bphyem125k10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693409.1 | 5e-92 | PREDICTED: uncharacterized protein LOC102714022 | ||||
TrEMBL | J3MG95 | 1e-90 | J3MG95_ORYBR; Uncharacterized protein | ||||
STRING | OB06G30390.1 | 2e-91 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |