PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000060G1850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 25701.4 Da PI: 5.442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 25 | 77 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k PH01000060G1850 25 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 77 456*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 24 | 115 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l++ PH01000060G1850 24 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCNYESLKKEKHALLKQLEK 115 8**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.78E-19 | 11 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 16 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-17 | 22 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-17 | 25 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-16 | 28 | 80 | No hit | No description |
PRINTS | PR00031 | 7.4E-6 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-6 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.1E-13 | 79 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGGEEDGEWM MDVPGGKGGK GGDRKKRFSE EQIKSLESMF ATQTKLEPRQ KLQLARELGL 60 QPRQVAIWFQ NKRARWKSKQ LEREYSALRD DYDALLCNYE SLKKEKHALL KQLEKLAEKL 120 QEPRGKYGDN ADAAGAGDDV RSGVAGLKEE FVDPGAALYS AEGGGGKFSH FCDDDAGLFL 180 RPSSQPSHGA AGFTASGPAE HQSSFQFHSS WPSSAEQTCS SSQWWEFESL SE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000060G1850 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001183573.1 | 1e-121 | uncharacterized protein LOC100502166 | ||||
Swissprot | Q651Z5 | 1e-106 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 1e-106 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A3L6DV53 | 1e-119 | A0A3L6DV53_MAIZE; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | C4J8W1 | 1e-119 | C4J8W1_MAIZE; Homeobox-leucine zipper protein ATHB-12 | ||||
STRING | GRMZM2G041462_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-34 | homeobox 7 |
Publications ? help Back to Top | |||
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