PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000059G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 339aa    MW: 37810.3 Da    PI: 4.9013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000059G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14e-5451341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeelv +yL kkv+++k++l evi+++d+y++ePwdLp+  ++   e+++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+
  PH01000059G0340   5 VPPGFRFHPTDEELVGYYLVKKVASQKIDL-EVIRDIDLYRIEPWDLPEhcRIGYeEQSDWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDKA 97 
                      69****************************.99***************63533332566*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      v + k++l+g++ktLvfykgrap+g+ktdW+mheyrle
  PH01000059G0340  98 VRD-KSRLIGMRKTLVFYKGRAPNGHKTDWIMHEYRLE 134
                      **9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-583164IPR003441NAC domain
PROSITE profilePS5100558.3425164IPR003441NAC domain
PfamPF023657.7E-286133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLVKKVASQ KIDLEVIRDI DLYRIEPWDL PEHCRIGYEE  60
QSDWYFFSYK DRKYPTGTRT NRATMTGFWK ATGRDKAVRD KSRLIGMRKT LVFYKGRAPN  120
GHKTDWIMHE YRLEADENGP PQARALISPS LFEEGWVVCR AFKKRTMQPP RGIVGAWDPS  180
YPYHDPILVG AAHFKQEAAE LDGAGAASAL LQYSNRFVEL PHLESPPLPN QSRQAASAEG  240
EEDHDSRQGA AVTTDWRTLD RFVASQLSPE KHTDQGLQEC KPAPGPDAGD DDDADIVALL  300
LLDGEQEEDT GRWLGTGLLS SVADAADCGL GVCVPGEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-52216612170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000059G0340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063131e-156AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence.
GenBankJN6340731e-156JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661992.11e-169PREDICTED: NAC domain-containing protein 105-like
SwissprotQ9SL411e-112NAC37_ARATH; NAC domain-containing protein 37
TrEMBLJ3N4C61e-168J3N4C6_ORYBR; Uncharacterized protein
STRINGOB10G23740.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-110vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]