PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000057G1650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 461aa    MW: 49015.1 Da    PI: 8.3571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000057G1650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08259284227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +     Ck+Gd+C+FaHg+
  PH01000057G1650 259 KTRMCTKYNTAEGCKFGDKCHFAHGE 284
                      9***********************96 PP
2zf-CCCH40.44.9e-13427452127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC +f++ GtC +G+rC+FaHg+
  PH01000057G1650 427 YKTKLCENFMK-GTCTFGERCHFAHGE 452
                      9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055534.1E-14166200IPR008480Protein of unknown function DUF761, plant
PROSITE profilePS501036.765193219IPR000571Zinc finger, CCCH-type
PfamPF146083.5206216No hitNo description
SuperFamilySSF902298.77E-8257288IPR000571Zinc finger, CCCH-type
SMARTSM003560.087257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695257285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-13258289IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4259284IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.06E-13324399IPR004088K Homology domain, type 1
SMARTSM003221.4E-10328398IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.2E-15328398IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257329393IPR004088K Homology domain, type 1
CDDcd001053.31E-13331393No hitNo description
PfamPF000133.1E-10331394IPR004088K Homology domain, type 1
SuperFamilySSF902294.71E-9425456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.591426453IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8426452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-14426456IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10427452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAPLFHMEAL LPSSISPKIN SILQSHIYPQ VGHVFHALAK FKSLLVKVLS KKRTPSDSGS  60
YHHSRSARSS KKSKIASFAK LQFTWAASSS AQARDLSVNH AHSYYGSTWS VVVPAEAEGV  120
RGGGGGGDDD TAEYGYLCWL EEERSDDAPA AEEGEDDDGD GNNAMNEIDR LAEKFIARCH  180
AKFLLEKQES YRRYQEMMAR SITVGCPFGE GCHFLHFVPG GYQAVAKTLN LGNPAVSAPA  240
RAPVDHAAVT NSHPASTGKT RMCTKYNTAE GCKFGDKCHF AHGERELSKP AYMSHEGAMA  300
PPMGSRFGGR HEPLPPATMG PPAGNFGASA TAKISVDASL AGGIIGKGGV NTKQICRVTG  360
VKLSIRDHES DPNLKNIELE GNFDQIKQAS SLVSELIATI SASAPAKHPV GAAAPAGRGG  420
PGGRANYKTK LCENFMKGTC TFGERCHFAH GESEQRKGAA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000057G1650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950840.0FP095084.1 Phyllostachys edulis cDNA clone: bphylf032i18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-142zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-133C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A0E0DJR20.0A0A0E0DJR2_9ORYZ; Uncharacterized protein
STRINGONIVA04G27230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]