PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000055G1320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 342aa    MW: 38432.6 Da    PI: 8.6182
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000055G1320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-1165104443
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                       k+ rr+++NReAAr+sR+RKka+i++Le+   +L +  +
  PH01000055G1320  65 EKVLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 104
                      6899*************************85444444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-861111No hitNo description
SMARTSM003387.5E-962125IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09464108IPR004827Basic-leucine zipper domain
PfamPF001702.8E-865105IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-766110No hitNo description
CDDcd147081.90E-2266118No hitNo description
PROSITE patternPS0003606984IPR004827Basic-leucine zipper domain
PfamPF141441.4E-27153227IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGMYDRQPPL GMWSNDAFKV DSSQATSGST IMEADTKFDT RIDEVPQVAL EPARSIDQEA  60
SKPPEKVLRR LAQNREAARK SRLRKKAYIQ QLETSRMKLA QLEQELQRVR QQGVYVSGNL  120
GDPNLGLTDS IDPGVAAFEI EYNNWVDDQN RHTGELRTAL QGQTSELELR MLVETGLRNY  180
DHLFRIKTIA SNSDVFYIMS GMWKTPAERF FLWIGGFRPS EVLKVLSPQL EPLTDQQVAA  240
VCRLQNTSMQ VEDALSQGME KLQQTLAEAL VATDPFGSSD VLQIGNAVEK LKGLANFVRQ  300
DEEIYLTGFG KKKKKRRRKK KNSCLSAINS DSAQRSEVLQ G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310320KKKKKRRRKKK
2311316KKKKRR
3312317KKKRRR
4312320KKKRRRKKK
5313318KKRRRK
6313320KKRRRKKK
7314320KRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000055G1320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823704.11e-168transcription factor TGAL6-like isoform X2
RefseqXP_025823705.11e-168transcription factor TGAL6-like isoform X2
SwissprotA0A0P0WFC81e-155TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0A9D9I61e-170A0A0A9D9I6_ARUDO; Uncharacterized protein
STRINGPavir.Ga00349.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.28e-99TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]