PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000054G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 818aa    MW: 90393 Da    PI: 9.8597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000054G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.3e-12131183148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+I           g+t+ qc +rwqk+l
  PH01000054G0640 131 KGGWTPEEDETLRKAVEAFKGRSWKKIVILGLkcahqVGKTEVQCLHRWQKVL 183
                      688***********************9654336677999***********986 PP
2Myb_DNA-binding543.9e-17189242147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      +g+WT+eEde+++d+vk++G+  W+ Ia+ ++         Rt+ qc +rwqk+
  PH01000054G0640 189 KGPWTQEEDEKIIDLVKKYGPTKWSVIAKSLPgrigkqcRERTEVQCLHRWQKV 242
                      79******************************6666666666666666666665 PP
3Myb_DNA-binding64.22.6e-20249295148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  PH01000054G0640 249 KGPWTQEEDEKIIDLVKKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 295
                      79******************************.*************97 PP
4Myb_DNA-binding31.63.7e-10301336138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gR l+
  PH01000054G0640 301 KDAWTAEEEWALINAHRTYGNR-WAEIAKVLP-GRRLY 336
                      679*******************.*********.99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.889126183IPR017930Myb domain
SuperFamilySSF466896.36E-11128185IPR009057Homeodomain-like
SMARTSM007171.8E-8130185IPR001005SANT/Myb domain
PfamPF002494.0E-10131183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-18133190IPR009057Homeodomain-like
CDDcd001672.47E-8134183No hitNo description
SuperFamilySSF466892.35E-21168230IPR009057Homeodomain-like
PROSITE profilePS5129423.869184239IPR017930Myb domain
SMARTSM007172.0E-16188245IPR001005SANT/Myb domain
PfamPF002491.3E-15189241IPR001005SANT/Myb domain
CDDcd001671.32E-13191230No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21191230IPR009057Homeodomain-like
PROSITE profilePS5129432.888244299IPR017930Myb domain
SuperFamilySSF466899.38E-27246334IPR009057Homeodomain-like
SMARTSM007172.8E-19248297IPR001005SANT/Myb domain
PfamPF002497.0E-19249295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-27250302IPR009057Homeodomain-like
CDDcd001671.68E-16251295No hitNo description
PROSITE profilePS512949.489300341IPR017930Myb domain
SMARTSM007173.9E-6300427IPR001005SANT/Myb domain
PfamPF002493.8E-8301333IPR001005SANT/Myb domain
CDDcd001675.60E-7303333No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17303332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-17412429IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MASGRGEVEA WVRVGGVVVS MLGAGGGAVK SSIAARQRTF PFRYLIQNKF RDQFGKRAGN  60
CGGDEDVMGT MAEVEQEGCV ENRQHLAASS SSVSDGSSYG GGLARMSPPV SSSANSISGL  120
RRTSGPIRRA KGGWTPEEDE TLRKAVEAFK GRSWKKIVIL GLKCAHQVGK TEVQCLHRWQ  180
KVLNPELIKG PWTQEEDEKI IDLVKKYGPT KWSVIAKSLP GRIGKQCRER TEVQCLHRWQ  240
KVLNPELIKG PWTQEEDEKI IDLVKKYGPT KWSVIAKSLP GRIGKQCRER WHNHLNPKIK  300
KDAWTAEEEW ALINAHRTYG NRWAEIAKVL PGRRLYLNKD QNAPEQGSKS RYRTKSQSRA  360
GKKNPGGYRI SRKNPDEFRL NLLKNQPKFE NWNLNLQNPE KPTGFPVPGY HRTDNSIKNH  420
WNSSLRKKLD IYSTSNVLAV PKKLGPNDFK DKPKQVATEN HLDLNKVPKN SKDIPEIAHR  480
SNFSPLLQTY KLEHARDCSG FLSLSILPTA QTLTLYEVSS IVDGSAVTSA VQGLESDSVR  540
DKGMEIDSVH EKGLEVNSTP DPVEESGTIQ LEAAPAKGEP ESSLKNEVHS TLGPLFYQIP  600
NMEDVAPTSS SLFSEHHTVH QTSEHYSDGI LSPIGCTTPS PTNGKISGQL SVDSILKSAA  660
NSFASTPSIL RRRKRDKSAP ASASELKSGV NTDSFYTPAG KGQTTDTPES FKTASFLSIG  720
SLDGLSSSVR SFDVSPPYRI RSKRMAVTKT IEKKLDFSSD GLDTCGSEIL NSPCQNYQST  780
NSTAEAPRMK EKKLNEHVIQ LETLTKNFAH TTNLDVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-581303334159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-581303334159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671676RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000054G0640
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644989.10.0PREDICTED: myb-related protein B
RefseqXP_020192352.10.0myb-related protein B-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLF2E9H00.0F2E9H0_HORVV; Predicted protein
STRINGTraes_3B_B594FC28C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-68myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]