PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000053G1640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 39491.2 Da PI: 8.2727 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.4e-53 | 17 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee+++ yL++k + +++ +++ evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkdke++s PH01000053G1640 17 LPPGFRFHPTDEEVITSYLRQKFFNPSFTS-RAVGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDKEIFS 109 79*************************999.88***************99999***************************************** PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++ lvg+kktLvfy grap+g+kt+Wvmhe+rle PH01000053G1640 110 NekpsGNPLVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 148 765555555***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-62 | 13 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.09 | 17 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 18 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MVESITSARS EQGALLLPPG FRFHPTDEEV ITSYLRQKFF NPSFTSRAVG EVDLNKCEPW 60 DLPSKAKMGE KEWYFFCHKD MKYPTGMRTN RATKEGYWKA TGKDKEIFSN EKPSGNPLVG 120 MKKTLVFYMG RAPRGSKTNW VMHEFRLEGS SRDKANLRVN PKDEWVVCKV FHKKGEAKTK 180 AAVDRYSAGT TPGVSSVDAG ECDGDFLDSM IDPKTTINAA PYNADYSISA AAGSTTSATG 240 SFVLPNYSLI HTSNQQSAVA NYVIPTSSGS NSSSWDNVLP AARPAHGLGS YVDNSISLHQ 300 DDRQALMAEA LGGVIGPNFG VSKGSPSSVM AGVLQQNSLG VQQNKQWSYG DPYSGYDLSY 360 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 15 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 15 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 15 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 15 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 15 | 178 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 15 | 178 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000053G1640 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098505 | 0.0 | FP098505.1 Phyllostachys edulis cDNA clone: bphyem203e08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 1e-133 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 1e-118 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | K3Y876 | 1e-132 | K3Y876_SETIT; Uncharacterized protein | ||||
STRING | Si010417m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-81 | Arabidopsis NAC domain containing protein 87 |