PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000050G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 262aa    MW: 28083.7 Da    PI: 8.3065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000050G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-0593111119
                      EEETTTTEEESSHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                      ++Cp C k+F+r  n++ H
  PH01000050G0800  93 FSCPVCFKTFNRYNNMQMH 111
                      89***************99 PP
2zf-C2H213.30.00024179199323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F  k + ++H +++
  PH01000050G0800 179 CRKCGKAFAVKGDWRTHEKNC 199
                      *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.34993120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-693111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6159197No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5163197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDVEGGSGAA AGDVTVALRI GLPSAGAADL ISGLSAGRAA QEEDSRDSGG GDDGEAEAAV  60
APLGFPSTPI GRMNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HTWGHGSQYR  120
KGPESLRGIQ PTAMLRLPCY CCAPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGLKPFLCR  180
KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHGHGA LGCNGGLDGL  240
DEDEDGAVSD IEHDGAAARS L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000050G0800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.11e-145zinc finger protein WIP2-like
SwissprotQ9SVY11e-122ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1E5V5R31e-146A0A1E5V5R3_9POAL; Zinc finger protein WIP2
STRINGPavir.Fa00506.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]