PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000049G1650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 37004.4 Da PI: 7.1432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 171 | 221 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+ge PH01000049G1650 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRGE 221 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.07E-32 | 170 | 228 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-22 | 171 | 228 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 171 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-38 | 171 | 234 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 171 | 228 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-14 | 172 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 172 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 194 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAAAIDMYKY NTSTHQIAAS SSASDQELMK ALEPFIRSAS SSSSSSSSPY HYYPSSMTQD 60 SYMPTPTSYT SLTTPPLPTT TSSPFSQLPP LYSSSQYAPS AASAMTGPIG LTHLGPAQIQ 120 QIQAQLLVQQ QQQQQQQRGL AGAFLGPRAQ PMKQSGSPPR SVAVGAVQSK LYRGVRQRHW 180 GKWVAEIRLP KNRTRLWLGT FDTAEDAALA YDKAAFRLRG ELARLNFPSL RRGGVHLAGP 240 LHASVDAKLT AICQSLAEPS SKNAAATAAE SAASAAEPES PKCSASTEGE ESVSAGSPPP 300 PTLLAPPVPE MEKLDFTEAP WDESETFQLR KYPSWDIDWD SILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 168 | 228 | 2 | 63 | ATERF1 |
3gcc_A | 2e-21 | 168 | 228 | 2 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000049G1650 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100724 | 0.0 | FP100724.1 Phyllostachys edulis cDNA clone: bphyem201a17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155853.1 | 1e-152 | ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | A0A446WKK7 | 1e-155 | A0A446WKK7_TRITD; Uncharacterized protein | ||||
TrEMBL | A7XA61 | 1e-155 | A7XA61_WHEAT; DRF-like transcription factor DRFL2a | ||||
STRING | GRMZM2G029323_P01 | 1e-151 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-46 | related to AP2 4 |