PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000048G1600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 146aa    MW: 15104.4 Da    PI: 10.4807
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000048G1600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.91.3e-2036105450
           RWP-RK   4 eisledlskyFslpikdAAkeLg.......................vclTvLKriCRqyGIkRWPhRkik 50 
                      ++s e++sk Fslpi++AA+ Lg                       vc++vLKriCR +GI RWP+Rk+ 
  PH01000048G1600  36 SLSYEEISKLFSLPIAEAASILGnpahplsssisiassvggitihgVCTSVLKRICRTHGIVRWPYRKLV 105
                      6899****************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.73120127IPR003035RWP-RK domain
PfamPF020424.8E-1937105IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASNAQAQPP VQQPAAAVPA PVAPVPQAQA KPTRVSLSYE EISKLFSLPI AEAASILGNP  60
AHPLSSSISI ASSVGGITIH GVCTSVLKRI CRTHGIVRWP YRKLVSGKSG DDIKNAEREK  120
AKELLELSKI AKQKALSSSG SSTIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000048G1600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709802e-61AK370980.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153379.14e-48uncharacterized protein LOC109738702
TrEMBLA0A0E0JGB67e-47A0A0E0JGB6_ORYPU; Uncharacterized protein
TrEMBLA0A3B6GU438e-47A0A3B6GU43_WHEAT; Uncharacterized protein
TrEMBLA0A453ELA88e-47A0A453ELA8_AEGTS; Uncharacterized protein
STRINGTraes_3B_35879621C.29e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.11e-07Nin-like family protein