PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000046G1730
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 265aa    MW: 28961.6 Da    PI: 9.7592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000046G1730genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1992142256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr++  +g+WvAeIr p +   r r++lg++g++e Aa a+++a+ kl+ge
  PH01000046G1730  92 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYGSPETAAHAYDRAAYKLRGE 142
                      59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-2791149No hitNo description
SMARTSM003804.3E-3192155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2992149IPR001471AP2/ERF domain
PROSITE profilePS5103222.66992149IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2192149IPR016177DNA-binding domain
PfamPF008471.2E-1393142IPR001471AP2/ERF domain
PRINTSPR003673.0E-1293104IPR001471AP2/ERF domain
PRINTSPR003673.0E-12131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDDSLRTLSP ASFPGEVRSA VSSLLLSPGA SALDTVFSHL PPPVTIPPLG SSVYYRQSEL  60
LRHFAASQAQ STASSSSAAS FPTADDGAPR KLYRGVRQRQ WGKWVAEIRL PQNRVRVWLG  120
TYGSPETAAH AYDRAAYKLR GEYARLNFPG VMDGRDCPEN LRQLRAAVDA KIQAIRVRLA  180
RKRKRARRQR EENKENACTE GAKAPTAARP VVSEGATSET TTTTSSYGSP DGVLSMSAAS  240
ADAECWLERM PSFDPELIWE MLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1791149463ATERF1
3gcc_A2e-1791149463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185ARKRKRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000046G1730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2601190.0KT260119.1 Phyllostachys edulis DREB2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-128ethylene-responsive transcription factor ERF061
TrEMBLA0A0M4L9610.0A0A0M4L961_9POAL; DREB2A
STRINGOPUNC05G24070.11e-133(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-32ERF family protein
Publications ? help Back to Top
  1. Wu H, et al.
    Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis).
    PLoS ONE, 2015. 10(5): p. e0126657
    [PMID:25985202]