PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000046G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 283aa    MW: 31296.1 Da    PI: 9.4414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000046G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.46.1e-32401801128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                      lp+G++F+Ptd+el+ e+L+ k+  ++      +   + +i++++    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++    
  PH01000046G0160  40 LPAGVKFDPTDQELL-EHLEGKAMPNSrklhplV---DeFIPTLEgengICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsded 128
                      799************.99**99988885664332...233443322334**********.555666688******************8554565 PP

              NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + +W++tgk++++l+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PH01000046G0160 129 ggETRWHKTGKTRPLLA-NGRPRGYKKILVLYtnYGNKRKPEKTNWVMHQYHL 180
                      55778************.999***********6557999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-3729199IPR003441NAC domain
PROSITE profilePS5100532.68640199IPR003441NAC domain
PfamPF023655.0E-1541180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASEHLPIDH TPPAQSHARV RLGHRWASTE TTTIQDLPGL PAGVKFDPTD QELLEHLEGK  60
AMPNSRKLHP LVDEFIPTLE GENGICYTHP ERLPGVSKDG LVRHFFHRPS KAYTTGTRKR  120
RKVHSDEDGG ETRWHKTGKT RPLLANGRPR GYKKILVLYT NYGNKRKPEK TNWVMHQYHL  180
GSDEEERDGE LVVSKVFFQT QPRQCGSKEA AVAANNNSVH GALAAGHEGV GSGVLKEANV  240
VELYNPAIMG YSQGVQNNRV PSAAAHFMPN FAGYAGRNSF DP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000046G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5507060.0KU550706.1 Bambusa emeiensis NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961226.11e-134NAC domain-containing protein 73
SwissprotO494591e-110NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR31e-164A0A109PNR3_BAMEM; NAC1
STRINGOPUNC05G23360.11e-136(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-112NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]