PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000045G2030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 697aa    MW: 77115.3 Da    PI: 8.9431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000045G2030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13275321354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r h   Er+RR+++N++f  Lr++lP+a      K +Ka+iL +A +Y++ L
  PH01000045G2030 275 RQHVLSERKRREKLNDSFKALRTVLPPA-----SKKDKASILIRAKDYVNTL 321
                      669999*********************9.....799************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-12275326No hitNo description
PfamPF000101.8E-10275321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15275339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-15275338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MGAGASCLGG GGAAPGGGRL TARDAELAAR RSGVGEEKRG RRRQGKRRAT AEWGWRGVAA  60
RLGQRGKTTK LHLNLILFNA RQPPPPHGPQ GHGPKAQIYM LMDMEDHEYA AAPPYRASLP  120
SSSSSSFRSF SGSRDDNSSL MLTAASTATS CHHHPEVSWQ IPLSPIAYAD GHHQHSSSLD  180
LPSLDHVMYY QEANQEQARG SRTGHGAAAC AFRPYVRHLG PKKKLKPGAS GQRAIKTAMS  240
ILWRMHMARL AQYYQMEMAA QAPAGSSNCH QLQHRQHVLS ERKRREKLND SFKALRTVLP  300
PASKKDKASI LIRAKDYVNT LKSRVSELEE NNRMLEESQL HRNDDDGKQG DDADDKIEVD  360
ICRSAAEGTL ECQEFHLKIE LRSGCSVMDA VVGILYCLKE GGNVSLVAMN IDSSSSCLPR  420
AKTFPRATVT LQMKSSSFDE DFLKESVIKA VKDVMQSENA TPRYIHQTVK IPNYWGCVLS  480
LTSKFLLRTP QSLKEGIDLR GQVNRVSSKV DNDLGVGSAI ARHIVRVPVA CNRFINLWRS  540
FSTDTNCRSP PVCWEVENHA EEENELIEPP IPLVEKEDDE MDAPTSFAES QKGKDNGSII  600
TQVHLVLFVS CRKVLKKGSV VGYFHTQPLL HFASENNLPL IDIINIRSQS NTLFSKEGKP  660
DETHKYKVPT PSKENTSYQL CKDECINTTR SWLGST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERKRRE
2281286RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000045G2030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.12e-99putative transcription factor bHLH041 isoform X1
RefseqXP_025809513.12e-99putative transcription factor bHLH041 isoform X2
TrEMBLA0A1E5UQ251e-109A0A1E5UQ25_9POAL; Uncharacterized protein
STRINGPavir.Ca00825.1.p2e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.18e-20bHLH family protein