PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000043G1440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 611aa    MW: 66630.3 Da    PI: 7.1329
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000043G1440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.9e-27208261155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+ + +t+e+v+SHLQkYRl
  PH01000043G1440 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNAENITRENVASHLQKYRL 261
                      79*******************.********************************8 PP
2Response_reg79.61.1e-26251331109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  
  PH01000043G1440  25 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITH 116
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +e+l++
  PH01000043G1440 117 GACDYLLKPVRIEQLRT 133
                      ***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1891609IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.2E-4122166No hitNo description
SuperFamilySSF521724.84E-3522143IPR011006CheY-like superfamily
SMARTSM004485.0E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.28324139IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.5E-2425134IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.02E-2726139No hitNo description
PROSITE profilePS5129410.824205264IPR017930Myb domain
SuperFamilySSF466893.23E-19205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-29206266IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-24208261IPR006447Myb domain, plants
PfamPF002492.2E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MTVEERQGKV NGHGSRDQFP VGMRVLAVDD DPTCLKVLEN LLLRCQYHVT TTGQAATALK  60
LLREKKDQFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANGETQTV MKGITHGACD  120
YLLKPVRIEQ LRTIWQHVIR RRNCDTKNCG NDNDDAGQRV QAMNAEGENG GVNRNKRNSR  180
KGRDENGDDG DDSDENSNEN ADSSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILD  240
LMNAENITRE NVASHLQKYR LYLKRLSTDA SRHANLAAAF GGRNPAYINM NSLETFRHYS  300
AYGRYRPVPT TTHSQSNNLL ARMNSPSAFG VHGLLPSQPL QLGHVQNNLS TSLNDLGGVN  360
NGNLIRGAHM STMVTGPSGN SFTNISNGTP LAPANNSAQT IESSNQQHLG RMRSSSVHPF  420
STLVGESPQF PDLGRSSNTW QTAGPSNIQE LGHNDSMSQA NPHVNGPRIE PVSSFTAPSN  480
QNPMLGNEMQ SQVPSIASNA LPMAFNQDTV PFTYGGSTNS REMLNNNLAF SNSGINTSLP  540
NLRIDNLVVP RQTLDGWNAG GASPLPDGRI DQQAVGNQLN YNNDLMGASR LQRGLSGGLD  600
DIVVDIFRPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24204267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000043G1440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626716.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0D9VD050.0A0A0D9VD05_9ORYZ; Two-component response regulator
STRINGLPERR02G05460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]