PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000042G1290

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 544aa MW: 59325.8 Da PI: 5.1306

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000042G1290	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	106.6	1.7e-33	261	346	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev++Li++r +++ r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a PH01000042G1290 261 RWPKTEVHTLIQLRMDLDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSNTCPYFHQLDA 346 8*******************************************************************8.9999*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	9.15E-7	169	238	No hit	No description
PROSITE profile	PS50090	7.213	254	318	IPR017877	Myb-like domain
SMART	SM00717	0.0065	258	320	IPR001005	SANT/Myb domain
Pfam	PF13837	2.3E-23	260	347	No hit	No description
CDD	cd12203	4.86E-29	261	325	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MSTLPPPPGP IQPAPISSVA PAAPVELPQP PPVSLQGFSF SSMSDSESDN ESEDDDMTAE 60 TGGSQDRLGK RKRGSGSKKM MSFFEGLMKQ VVERQEEMQR RFLETMEKRD AERTAREEAW 120 RRQEVARLNR EQEQLAQERA AAASRDAAII AFLQRIGGQS VQVPPGVVPM PTPMQVQTPP 180 PAKQPRQHQQ QQPPAPPQAT PQQQQPIPAT PLQQQPPQPQ HKETTHHEAG TPRSAPPTSG 240 SSLELDTVLG GGEGGSASSS RWPKTEVHTL IQLRMDLDMR YQETGPKGPL WEDISAGMRR 300 LGYNRSSKRC KEKWENINKY FKKVKESNKK RPEDSNTCPY FHQLDAIYRG GGAAPASAAN 360 AIAAAAAVPE QQNPNRHEIE GKNINDNDKR NNGGGGAAHV PTSNGETAPT TAAIDVDSGM 420 KKVITPYTPT NQFPLAFFEL DACARSGWKL TGYELAVKPE DIVRELSEPP PREFTTDETD 480 SDDMGDDYTD DGEDGEDDGK MQYRIQFQRP NPGGTNNAPP PAIAPTTAVP TSTPSSTFLA 540 MVQ*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MSTLPPPPGP IQPAPISSVA PAAPVELPQP PPVSLQGFSF SSMSDSESDN ESEDDDMTAE  60
TGGSQDRLGK RKRGSGSKKM MSFFEGLMKQ VVERQEEMQR RFLETMEKRD AERTAREEAW  120
RRQEVARLNR EQEQLAQERA AAASRDAAII AFLQRIGGQS VQVPPGVVPM PTPMQVQTPP  180
PAKQPRQHQQ QQPPAPPQAT PQQQQPIPAT PLQQQPPQPQ HKETTHHEAG TPRSAPPTSG  240
SSLELDTVLG GGEGGSASSS RWPKTEVHTL IQLRMDLDMR YQETGPKGPL WEDISAGMRR  300
LGYNRSSKRC KEKWENINKY FKKVKESNKK RPEDSNTCPY FHQLDAIYRG GGAAPASAAN  360
AIAAAAAVPE QQNPNRHEIE GKNINDNDKR NNGGGGAAHV PTSNGETAPT TAAIDVDSGM  420
KKVITPYTPT NQFPLAFFEL DACARSGWKL TGYELAVKPE DIVRELSEPP PREFTTDETD  480
SDDMGDDYTD DGEDGEDDGK MQYRIQFQRP NPGGTNNAPP PAIAPTTAVP TSTPSSTFLA  540
MVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000042G1290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880668.1	0.0	trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A0D9W7P8	0.0	A0A0D9W7P8_9ORYZ; Uncharacterized protein
STRING	LPERR04G16420.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-48	Trihelix family protein