PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000042G1220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 28373.5 Da PI: 4.8761 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.2e-19 | 52 | 106 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ft+eq++ Le++F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ PH01000042G1220 52 RKQRFTDEQIRSLESMFHAhRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106 4678**************9789********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.1 | 2.7e-39 | 51 | 144 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+k+r+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++l+e PH01000042G1220 51 ERKQRFTDEQIRSLESMFHAHRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYTALRAKYDALQARVESLRQEKLALTAQLHE 144 69*******************99*******************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.44E-18 | 39 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 47 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-18 | 49 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 50 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.90E-16 | 52 | 109 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 52 | 106 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.3E-7 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.3E-7 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.2E-14 | 108 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDRGGRHQHQ FFMPPPVPVQ QQQLCMPMMD EQFLGGGGGG GAAPGRGAAG ERKQRFTDEQ 60 IRSLESMFHA HRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQI EHDYTALRAK 120 YDALQARVES LRQEKLALTA QLHELSERLR GREQRGGNGV STTTATASSS SCNGSDEGFD 180 DEEFDDDKRN AIGCVHIEPP ESCVLGGTAC ATPADVSVES ECDDQLDYDG GFLESFCATP 240 ELWEPWPLVE WNAVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000042G1220 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224440 | 0.0 | AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976404.1 | 1e-119 | homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q01IK0 | 1e-102 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 1e-102 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A368RX29 | 1e-118 | A0A368RX29_SETIT; Uncharacterized protein | ||||
STRING | Si010550m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 9e-35 | homeobox 7 |