PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000039G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 858aa    MW: 93198.9 Da    PI: 6.4687
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000039G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-183188457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PH01000039G0640 31 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 88
                     6789****************************************************97 PP
2START173.81.1e-541793862204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  PH01000039G0640 179 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIEL 271
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRaellpSg+li+p+++g+s +++v+hvdl++++++++lr+
  PH01000039G0640 272 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpdTPNFVRAELLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 365
                      ***********999******************************99999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  PH01000039G0640 366 LYESPKVLAQKMTIAALRHIR 386
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-181688IPR009057Homeodomain-like
PROSITE profilePS5007115.4352589IPR001356Homeobox domain
SMARTSM003892.6E-152793IPR001356Homeobox domain
SuperFamilySSF466896.84E-172992IPR009057Homeodomain-like
CDDcd000863.04E-163090No hitNo description
PfamPF000465.1E-163188IPR001356Homeobox domain
CDDcd146861.82E-682121No hitNo description
PROSITE profilePS5084827.103169369IPR002913START domain
CDDcd088758.81E-70173389No hitNo description
Gene3DG3DSA:3.30.530.202.6E-24177370IPR023393START-like domain
SMARTSM002343.5E-46178388IPR002913START domain
SuperFamilySSF559612.33E-38179389No hitNo description
PfamPF018521.9E-52179386IPR002913START domain
PfamPF086703.8E-52714856IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MAAAMVTAVH GGKDRSSPGG GGAPQVDTGK YVRYTPEQVE ALERVYSECP KPSSLRRQQL  60
IRECPILSNI EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV  120
SRLVYENGSM RQQLHNPSVA TTDTSCESVV TSGQHHQQQN PAALRPQRDA NNPAGLLAIA  180
EETLAEFLSK ATGTAVDWVQ MVGMKPGPDS IGIIAVSHNC SGVAARACGL VSLEPTKVAE  240
ILKDRPSWYR DCRCVDVLHV IPTGNGGTIE LIYMQTYAPT TLAAPRDFWT LRYTSGLEDG  300
SLVICERSLT QSTGGPSGPD TPNFVRAELL PSGYLIRPCE GGGSMIHIVD HVDLDAWSVP  360
EVLRPLYESP KVLAQKMTIA ALRHIRQIAH ESSGEMPYGG GRQPAVLRTF SQRLSRGFND  420
AVNGFPDDGW SLMSSDGAED VTIAINSSPN KLVGSHVNSS QLFSAIGGGI LCAKASMLLQ  480
NVPPALLVRF LREHRSEWAD PGVDAYSAGA LRASPYAVPG LRASGFMGSQ VILPLAHTLE  540
HEEFLEVIRL EGHSLCHDEV VLSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFADDAP  600
LLPSGFRVIP LDAKTDAPSA TRTLDLASTL EVGSGGTTRA SNDTSSTCNT RSVLTIAFQF  660
SYENHLRESV AAMARQYVRT VVASVQRVAM AIAPSRLGGQ IEMKNPPGSP EAHTLARWIG  720
RSYRFHTGAE LLNTDSQSTD SSLKALWQHT DSIMCCSLKA APVFTFANQA GLDMLETTLI  780
ALQDISLEKI LDDDGRKALC SEFPKIMQQG FAYLPGGVCV SSMGRPVSYE QAVAWKVLSD  840
DDTPHCLAFM FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000039G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0E0CTW00.0A0A0E0CTW0_9ORYZ; Uncharacterized protein
STRINGOMERI03G00520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]