PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000038G1330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | B3 | ||||||||
Protein Properties | Length: 262aa MW: 29666 Da PI: 8.725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 161 | 250 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k +++s+v + +l lp++f+e++ +k+ +tl de+ +++e ++ ++++ l++GW +F+ +gL +gD vF+l++ ++l+v PH01000038G1330 161 FMKPMLHSHVVRGFWLGLPRRFCETYL-PKHD-SIVTLVDEKDEEFETNY--LAYKNG--LSGGWAGFALCHGLLDGDATVFQLIK--PTTLKV 246 899***********************4.3334.38***************..566555..9**********************997..666788 PP EEE- CS B3 95 kvfr 98 +++ PH01000038G1330 247 YIIQ 250 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-18 | 152 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-21 | 154 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-23 | 159 | 249 | No hit | No description |
PROSITE profile | PS50863 | 11.11 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-13 | 161 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-15 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAIEKGMSAY EAARERTVEE NKRKMEALNL RHLSAAISEA PKTPSPMKQK RRRIIEVAVV 60 APSPRRRSRR LANLPEVKYA EVTYLHTLSI IEHGIFSSSA RLSTFCYEVA PDKERTKRSP 120 RKLYESIYLA SRGSISMEAR LEAARKAEEL ESQLDPEYPS FMKPMLHSHV VRGFWLGLPR 180 RFCETYLPKH DSIVTLVDEK DEEFETNYLA YKNGLSGGWA GFALCHGLLD GDATVFQLIK 240 PTTLKVYIIQ ATVDDGNEVT E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 53 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000038G1330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122017 | 1e-116 | AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633231.1 | 1e-147 | B3 domain-containing protein Os03g0184500 | ||||
Swissprot | Q10QS9 | 1e-148 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A0D3FEQ2 | 1e-146 | A0A0D3FEQ2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Z328 | 1e-146 | A0A0D9Z328_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G2D5 | 1e-146 | A0A0E0G2D5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NQP1 | 1e-146 | A0A0E0NQP1_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1P8A4 | 1e-146 | I1P8A4_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM03G06210.1 | 1e-147 | (Oryza glumipatula) | ||||
STRING | ORUFI03G06050.1 | 1e-147 | (Oryza rufipogon) | ||||
STRING | OS03T0184500-01 | 1e-147 | (Oryza sativa) | ||||
STRING | ONIVA02G06710.1 | 1e-147 | (Oryza nivara) | ||||
STRING | ORGLA03G0060000.1 | 1e-147 | (Oryza glaberrima) | ||||
STRING | OBART03G06210.1 | 1e-147 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 7e-46 | B3 family protein |
Publications ? help Back to Top | |||
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