PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000038G0910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 33979.2 Da PI: 4.3453 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 87 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp+ + r++lg+f tae Aa a++ a++ l+g PH01000038G0910 87 TRFRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDDAARDLRG 137 589*******.**********75....44************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-12 | 87 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-31 | 88 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-35 | 88 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 88 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 88 | 146 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-12 | 96 | 147 | No hit | No description |
PRINTS | PR00367 | 2.6E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MCGGVILAEH IPTTPARRVT VGHLWPAGKA GKKRQRGGPA ADDFEAAFGR FDEDSEEEED 60 DEVIERKALE FGANGNGKAA SRRTKRTRFR GVRRRPWGKW AAEIRDPVKG VRVWLGTFPT 120 AEAAALAYDD AARDLRGAGA KLNFPSSSSA TACARKRRAT AAKATPYVVD LVDEEDDTPS 180 VKNEAEASES SETSSALPDF SWQGMSASDD GAAQPVHLEV ESDQSVDLGD ATKRLRIEPL 240 QTNEVLPAAS EDSDILFDDP FVFGDQFNFF NGGAYESLDS RFGGDAVQSN GAVDESLGLW 300 SFDDDCLVED SVCY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 85 | 145 | 2 | 63 | ATERF1 |
3gcc_A | 1e-19 | 85 | 145 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 30 | 36 | GKKRQRG |
2 | 81 | 95 | RRTKRTRFRGVRRRP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000038G0910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP091898 | 2e-62 | FP091898.1 Phyllostachys edulis cDNA clone: bphyem115l08, full insert sequence. | |||
GenBank | FP097786 | 2e-62 | FP097786.1 Phyllostachys edulis cDNA clone: bphylf031b23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797880.1 | 2e-93 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A2T7CGR1 | 3e-93 | A0A2T7CGR1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04158.1.p | 2e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-12 | ethylene-responsive element binding protein |