PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000034G2110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 376aa    MW: 38017 Da    PI: 9.813
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000034G2110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.33e-30572262137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti        pa++++tgt++++a+++  + s +ss+s+ s++      
  PH01000034G2110  57 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETI-------GPAVIAATGTGTIPANFTsLNFSLRSSGSSLSIPaqlraa 143
                      789******************************************99.......69*************9998888999999988888999999 PP

              TCP  89 ...............................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137
                                                     + ++s+ +   s +s +  l+++ +s++ a  +  +r+ r++++m+++++++
  PH01000034G2110 144 glpgprfggaradawdrvvglgfgglegpasATSSSSSPLLLSFHSGSVGLDVSPSSSSAAANTdlSRKrRWEQEMQQQHQQQ 226
                      9****************************974444444777777777777998885554444434677778899998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-3261226IPR005333Transcription factor, TCP
PROSITE profilePS5136916.61163117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDVAGDAGGS RRPNFPLQLL EKKEDQLCST SPAAGVGVGA GTNGSAPGEL QARKVAPPKR  60
TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIGPAVIAA TGTGTIPANF  120
TSLNFSLRSS GSSLSIPAQL RAAGLPGPRF GGARADAWDR VVGLGFGGLE GPASATSSSS  180
SPLLLSFHSG SVGLDVSPSS SSAAANTDLS RKRRWEQEMQ QQHQQQQYQQ QMAGYTQSQM  240
PGTVWMVPSS NAQAAGGAPA GGGGGSESIW AFPQSGSGGG ATVYRGVPSG LHFMNFPAPM  300
ALMPTGGQQL GLGQVGGNGS GGGEGHMGIL AALNAYRAQA AASDAGAGQN GAEGSSQHQQ  360
HGGGERHESM SASDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000034G2110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965036.11e-147transcription factor TCP15
SwissprotQ93Z004e-41TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0A9RPQ81e-160A0A0A9RPQ8_ARUDO; Uncharacterized protein
STRINGPavir.J39613.1.p1e-147(Panicum virgatum)
STRINGGRMZM2G142751_P011e-147(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-36TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]