PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000034G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 336aa    MW: 36195.4 Da    PI: 6.9686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000034G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19158207255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta++Aa a+++a+ +l+g
  PH01000034G0340 158 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAKDAALAYDKAAFRLRG 207
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.73E-31157217No hitNo description
SuperFamilySSF541716.47E-22158216IPR016177DNA-binding domain
SMARTSM003801.4E-36158221IPR001471AP2/ERF domain
PROSITE profilePS5103222.787158215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-32158216IPR001471AP2/ERF domain
PfamPF008478.2E-13159207IPR001471AP2/ERF domain
PRINTSPR003672.2E-10159170IPR001471AP2/ERF domain
PRINTSPR003672.2E-10181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAAIDLYDTR NQPSFSSSSS DQELMKALEP FIRSVSPTSS TSTSSPFHSY SPLPQESYYY  60
PVSSYTTVPP APTAPTATSF SQLPPLPPSS QYTSPAAAYP PENGAVGLTH LGPEQIQQIQ  120
AQFLIQQHQR RLAASLLGPR AQPMKQAGAA PSSSAAKLYR GVRQRHWGKW VAEIRLPKNR  180
TRLWLGTFDT AKDAALAYDK AAFRLRGDAA RLNFPNLRRG GAHLAGPLHE SVDAKLTAIC  240
QNIGAAPTAS RSNTTTTAPP DSPKASASTT TTEGDESALS AGSPLLPPLP PSQQLAPPLP  300
EMDNLDFSEA PWDESDAFHF HKYPSWEIDW DSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21154215163ATERF1
3gcc_A9e-21154215163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000034G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015560.0FP101556.1 Phyllostachys edulis cDNA clone: bphylf026l06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148534.11e-119ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A3B6RC301e-126A0A3B6RC30_WHEAT; Uncharacterized protein
TrEMBLA0A446X7501e-126A0A446X750_TRITD; Uncharacterized protein
STRINGPavir.Da01302.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-46related to AP2 4