PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000032G1740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 23830.8 Da PI: 10.034 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++ a+++++g+ PH01000032G1740 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDTAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.38E-31 | 32 | 90 | No hit | No description |
SMART | SM00380 | 4.5E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.329 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAPRPAEQVP VQSATGHGLG VGGGVGGGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDTAAREF RGAKAKTNFP PPARSPVVGG GGGGSPSSNS TVESSGGGSG 120 GVQAPIQAMP LPPALDLDLF HRAAVAGAGV RFPFKGYPVV RPAPHPYFFY GQAAAAAAGY 180 RMMKLSSPVT VATVAQSDSD CSSVVDLAPS PPAVTAKKAV PFDLDLNGPP PAEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 29 | 90 | 1 | 63 | ATERF1 |
3gcc_A | 2e-22 | 29 | 90 | 1 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000032G1740 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100632 | 0.0 | FP100632.1 Phyllostachys edulis cDNA clone: bphylf032b21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564396.1 | 2e-90 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | I1HSG8 | 4e-89 | I1HSG8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G52370.1 | 7e-90 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 9e-20 | ethylene response factor 8 |