PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000032G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 445aa    MW: 46330.8 Da    PI: 9.0179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000032G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018211233223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg+ F  ++ L+ H  + H
  PH01000032G0410 211 SCHRCGEQFGKWEALEAHHLSkH 233
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-23235443No hitNo description
Gene3DG3DSA:3.90.228.104.1E-10259415IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGERRRRANA VAGGCGWGGE EETKAAAPAA PAPTVWFALK RSLHCRSAPS EVHVPRPKAS  60
AVAGAGGGGH LSAIVTKRAA RSGCSRSIAN LRDVIHGSKR HPEQPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAG GALAHEAEGD GGVVSSFVGT LRPGTPGPGD  180
GAAPGVVAAG HRASCEVDAV KSGGKGSGGL SCHRCGEQFG KWEALEAHHL SKHAVTELVE  240
GDSSRKIVEI ICRTSLLKSE SSCVRIERVF KVHNTQRTLS HFEEYREAVK VKASKLPKKH  300
PRCLADGNEL LRFHGATLSC ALGAGAGSSL CASDKCAVCR IIRHGFSAKK EGKAGVGVFT  360
TSTSGRAFES IEAYDDDPAT RKALLVCRVI AGRVHKPLDN LKEFVGQTGF DSLAGKVGPY  420
SNIEELYLLN PGALLPCFVV ICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000032G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLQ8LQM00.0Q8LQM0_ORYSJ; Os01g0785900 protein
STRINGOS01T0785900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-139C2H2 family protein