PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000031G1000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 580aa MW: 64689.2 Da PI: 4.8419 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.4e-26 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl PH01000031G1000 199 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 252 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 80.4 | 6.1e-27 | 15 | 123 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ ++l+++l+k y ev+++ ++ ale+l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ PH01000031G1000 15 VLVVDDDPTWIKILEKMLRKCSY-EVTTCGLARVALEILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQH 106 89*********************.***************877777**********************6654.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ PH01000031G1000 107 GACDYLLKPVRMKELRN 123 **************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.1E-168 | 4 | 574 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 9.53E-35 | 12 | 135 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-43 | 12 | 147 | No hit | No description |
SMART | SM00448 | 2.5E-31 | 13 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.452 | 14 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.3E-24 | 15 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.60E-29 | 16 | 128 | No hit | No description |
PROSITE profile | PS51294 | 9.161 | 196 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.31E-18 | 196 | 256 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 198 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-22 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-8 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 580 aa Download sequence Send to blast |
MALPDATAFP YGLRVLVVDD DPTWIKILEK MLRKCSYEVT TCGLARVALE ILRERKNKFD 60 IVISDVNMPD MDGFKLLEHI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE 120 LRNIWQHVYR KKMHEVKEIE GHDSGHDSCD DLQLLRNGFE GFDEKSLFMR ADSDTMRKRK 180 DVDKDHADQE SSDGATVKKA RVVWSVDLHQ KFVNAVNQIG FDKVGPKKIL DLMNVPGLTR 240 ENVASHLQKY RLYLSRLQKQ TEERILGAAR QDFSHKGPSD NLGSSFQEQP SNIANVYPHA 300 SQNSMLDSQL EDTKSTVPLP VSDKNRTPVS DVADSQNVAD ASPLGGLLSF KGLPVNQDRK 360 PSETMILECQ AWSGGLPSKQ FMQYPKHNHE RCDLLGDYSC LPKPDLEHPI APSHLFTPPP 420 LISMSCSMEG DARDFSDVKP ALLNCIKSLS PALTCTVDSV SVQLSDSVVT STDGYIKFSS 480 EGSPSIKDCY FDQTNNQGTL LPSQEPSTIC GTDLASLPED MPSYPLQGVS FENIGLSSID 540 LFHYNDTTIL SGVQSNWYDD LEYSSETMDY PLIDECLFA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 198 | 257 | 4 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000031G1000 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622017.1 | 0.0 | two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A0D9V972 | 0.0 | A0A0D9V972_9ORYZ; Two-component response regulator | ||||
STRING | ORUFI01G44260.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0904700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0348700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G40940.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-113 | response regulator 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|