PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000031G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 347aa    MW: 36460.7 Da    PI: 7.7275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000031G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11281326655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  + +++L +Av+YI++Lq
  PH01000031G0250 281 SIAERERRTRISKRLKKLQVLVPNM----DKQTNTSDMLDLAVHYIRELQ 326
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.649275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14278336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-11279330No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14280336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNRLTPPPPG AGEGLARYGS APGSLLAAIA DSVTRGGEAA PLAPPGAVSR FFSGESSGLT  60
SCESSCRTDG RPGLERAYGG SGEIHVPPPA PAQVGLGGGG DGPGVPLFRH SSSPAGLLSR  120
LMADPHGMAG TRGIGNGCYS QAGTDAAGAM AHRRLSSQWS FSRQDLPQIS EMGIIPDIGE  180
SITGCNGSSD GGAQPSSYLS RNFSVSSWDD TNSIMFSSSS RKAKVDAADD MVTSFSNIDS  240
QFSLSKSSLE MSGLDDYLQL QQDSIACKVR AKRGCATHPR SIAERERRTR ISKRLKKLQV  300
LVPNMDKQTN TSDMLDLAVH YIRELQGQVE KLKHDQANCT CSGNHNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000031G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0972450.0FP097245.1 Phyllostachys edulis cDNA clone: bphyst027a03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.10.0transcription factor bHLH128-like
TrEMBLA0A2S3HP780.0A0A2S3HP78_9POAL; Uncharacterized protein
STRINGPavir.J01306.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-58bHLH family protein